GoldenPathQuery (Gemma Core 1.31.7-SNAPSHOT API)

java.lang.Object
- ubic.gemma.core.goldenpath.GoldenPath
- - ubic.gemma.core.goldenpath.GoldenPathQuery

public class GoldenPathQuery
extends GoldenPath

Author:: pavlidis

Field Summary
- Fields inherited from class ubic.gemma.core.goldenpath.GoldenPath
  log

Constructor Summary

Constructors
Constructor Description

GoldenPathQuery(Taxon taxon)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`Collection<BlatResult>`	`findAlignments(String accession)`	Locate the alignment for the given sequence, if it exists in the goldenpath database.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - GoldenPathQuery
```
public GoldenPathQuery(Taxon taxon)
```
- Method Detail
  - findAlignments
```
public Collection<BlatResult> findAlignments(String accession)
```
    Locate the alignment for the given sequence, if it exists in the goldenpath database. Implementation note: This queries the est and mrna tables only.
    
    Parameters:
    
    accession - The genbank accession of the sequence.
    
    Returns:
    
    blat results