Package ubic.gemma.persistence.service

Class TableMaintenanceUtilImpl

java.lang.Object

ubic.gemma.persistence.service.TableMaintenanceUtilImpl

All Implemented Interfaces:

TableMaintenanceUtil

@Service("tableMaintenanceUtil")
public class TableMaintenanceUtilImpl
extends Object
implements TableMaintenanceUtil

Functions for maintaining the database. This is intended for denormalized tables and statistics tables that need to be generated periodically.

Author:

jsantos, paul

Field Summary

Fields inherited from interface ubic.gemma.persistence.service.TableMaintenanceUtil

EE2AD_QUERY_SPACE, EE2C_QUERY_SPACE, GENE2CS_BATCH_SIZE, GENE2CS_QUERY_SPACE

Constructor Summary

Constructors

Constructor	Description
TableMaintenanceUtilImpl()

Method Summary

Modifier and Type	Method	Description
void	disableEmail()	For use in tests.
int	updateExpressionExperiment2ArrayDesignEntries(Date sinceLastUpdate)	Update the EXPRESSION_EXPERIMENT2_ARRAY_DESIGN table.
int	updateExpressionExperiment2CharacteristicEntries(Class<?> level, Date sinceLastUpdate, boolean truncate)	Update a specific level of the EXPRESSION_EXPERIMENT2CHARACTERISTIC table.
int	updateExpressionExperiment2CharacteristicEntries(Date sinceLastUpdate, boolean truncate)	Update the EXPRESSION_EXPERIMENT2CHARACTERISTIC table.
void	updateGene2CsEntries()	If necessary, update the GENE2CS table.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TableMaintenanceUtilImpl

public TableMaintenanceUtilImpl()

Method Detail

updateGene2CsEntries

@Transactional
public void updateGene2CsEntries()

Description copied from interface: TableMaintenanceUtil

If necessary, update the GENE2CS table.

Specified by:

updateGene2CsEntries in interface TableMaintenanceUtil

updateExpressionExperiment2CharacteristicEntries

@Transactional
public int updateExpressionExperiment2CharacteristicEntries(@Nullable
                                                            Date sinceLastUpdate,
                                                            boolean truncate)

Description copied from interface: TableMaintenanceUtil

Update the EXPRESSION_EXPERIMENT2CHARACTERISTIC table.

Specified by:

updateExpressionExperiment2CharacteristicEntries in interface TableMaintenanceUtil

Returns:

the number of records that were created or updated

updateExpressionExperiment2CharacteristicEntries

@Transactional
public int updateExpressionExperiment2CharacteristicEntries(Class<?> level,
                                                            @Nullable
                                                            Date sinceLastUpdate,
                                                            boolean truncate)

Description copied from interface: TableMaintenanceUtil

Update a specific level of the EXPRESSION_EXPERIMENT2CHARACTERISTIC table.

Specified by:

updateExpressionExperiment2CharacteristicEntries in interface TableMaintenanceUtil

Parameters:

level - the level to update which is either ExpressionExperiment, BioMaterial or ExperimentalDesign

Returns:

the number of records that were created or updated

updateExpressionExperiment2ArrayDesignEntries

@Transactional
public int updateExpressionExperiment2ArrayDesignEntries(@Nullable
                                                         Date sinceLastUpdate)

Description copied from interface: TableMaintenanceUtil

Update the EXPRESSION_EXPERIMENT2_ARRAY_DESIGN table.

Specified by:

updateExpressionExperiment2ArrayDesignEntries in interface TableMaintenanceUtil

Returns:

the number of records that were created or updated

disableEmail

public void disableEmail()

For use in tests.

Specified by:

disableEmail in interface TableMaintenanceUtil