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A

arrayDesignMergeCli() - Method in class ubic.gemma.core.apps.ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration

ArrayDesignMergeCliTest - Class in ubic.gemma.core.apps

ArrayDesignMergeCliTest() - Constructor for class ubic.gemma.core.apps.ArrayDesignMergeCliTest

ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration - Class in ubic.gemma.core.apps

ArrayDesignMergeCliTestContextConfiguration() - Constructor for class ubic.gemma.core.apps.ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration

arrayDesignMergeService() - Method in class ubic.gemma.core.apps.ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration

arrayDesignReportService() - Method in class ubic.gemma.core.apps.ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration

arrayDesignService() - Method in class ubic.gemma.core.apps.ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration

auditTrailService() - Method in class ubic.gemma.core.apps.ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration

B

BaseCliTest - Class in ubic.gemma.core.util.test

Minimal setup

BaseCliTest() - Constructor for class ubic.gemma.core.util.test.BaseCliTest

C

CliTest - Class in ubic.gemma.core.apps

CliTest() - Constructor for class ubic.gemma.core.apps.CliTest

CompletionGeneratorTest - Class in ubic.gemma.core.util

CompletionGeneratorTest() - Constructor for class ubic.gemma.core.util.CompletionGeneratorTest

E

ExternalDatabaseUpdaterCliTest - Class in ubic.gemma.core.apps

ExternalDatabaseUpdaterCliTest() - Constructor for class ubic.gemma.core.apps.ExternalDatabaseUpdaterCliTest

F

FactorValueMigratorCLITest - Class in ubic.gemma.core.apps

Deprecated.

FactorValueMigratorCLITest() - Constructor for class ubic.gemma.core.apps.FactorValueMigratorCLITest

Deprecated.

FactorValueMigratorServiceTest - Class in ubic.gemma.core.apps

Deprecated.

FactorValueMigratorServiceTest() - Constructor for class ubic.gemma.core.apps.FactorValueMigratorServiceTest

Deprecated.

FindObsoleteTermsCliTest - Class in ubic.gemma.core.apps

FindObsoleteTermsCliTest() - Constructor for class ubic.gemma.core.apps.FindObsoleteTermsCliTest

M

manualAuthenticationService() - Method in class ubic.gemma.core.apps.ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration

MeterRegistryCliConfigurerTest - Class in ubic.gemma.core.metrics

MeterRegistryCliConfigurerTest() - Constructor for class ubic.gemma.core.metrics.MeterRegistryCliConfigurerTest

N

NCBIGene2GOAssociationLoaderCLITest - Class in ubic.gemma.core.apps

NCBIGene2GOAssociationLoaderCLITest() - Constructor for class ubic.gemma.core.apps.NCBIGene2GOAssociationLoaderCLITest

P

PubMedSearcherIntegrationTest - Class in ubic.gemma.core.loader.entrez.pubmed

Tests command line.

PubMedSearcherIntegrationTest() - Constructor for class ubic.gemma.core.loader.entrez.pubmed.PubMedSearcherIntegrationTest

R

RNASeqDataAddCliTest - Class in ubic.gemma.core.apps

RNASeqDataAddCliTest() - Constructor for class ubic.gemma.core.apps.RNASeqDataAddCliTest

S

setUp() - Method in class ubic.gemma.core.apps.ExternalDatabaseUpdaterCliTest

setUp() - Method in class ubic.gemma.core.apps.FactorValueMigratorCLITest

Deprecated.

setUp() - Method in class ubic.gemma.core.apps.FactorValueMigratorServiceTest

Deprecated.

setUp() - Method in class ubic.gemma.core.apps.RNASeqDataAddCliTest

T

tearDown() - Method in class ubic.gemma.core.apps.ArrayDesignMergeCliTest

tearDown() - Method in class ubic.gemma.core.apps.ExternalDatabaseUpdaterCliTest

tearDown() - Method in class ubic.gemma.core.apps.FactorValueMigratorServiceTest

Deprecated.

tearDown() - Method in class ubic.gemma.core.apps.RNASeqDataAddCliTest

test() - Method in class ubic.gemma.core.apps.ArrayDesignMergeCliTest

test() - Method in class ubic.gemma.core.apps.ExternalDatabaseUpdaterCliTest

test() - Method in class ubic.gemma.core.apps.FindObsoleteTermsCliTest

test() - Method in class ubic.gemma.core.apps.NCBIGene2GOAssociationLoaderCLITest

test() - Method in class ubic.gemma.core.metrics.MeterRegistryCliConfigurerTest

testBash() - Method in class ubic.gemma.core.util.CompletionGeneratorTest

testBashCompletions() - Method in class ubic.gemma.core.util.CompletionGeneratorTest

testFish() - Method in class ubic.gemma.core.util.CompletionGeneratorTest

testFishCompletions() - Method in class ubic.gemma.core.util.CompletionGeneratorTest

testMain() - Method in class ubic.gemma.core.loader.entrez.pubmed.PubMedSearcherIntegrationTest

Test method for AbstractCLI.executeCommand(String[]).

testMaskPwd() - Method in class ubic.gemma.core.apps.CliTest

testMigrateFactorValues() - Method in class ubic.gemma.core.apps.FactorValueMigratorCLITest

Deprecated.

testMigrationThatReuseObject() - Method in class ubic.gemma.core.apps.FactorValueMigratorServiceTest

Deprecated.

testMigrationThatReusesExistingStatement() - Method in class ubic.gemma.core.apps.FactorValueMigratorServiceTest

Deprecated.

testMigrationWithFreeTextSubject() - Method in class ubic.gemma.core.apps.FactorValueMigratorServiceTest

Deprecated.

testPaired() - Method in class ubic.gemma.core.apps.RNASeqDataAddCliTest

testUnpaired() - Method in class ubic.gemma.core.apps.RNASeqDataAddCliTest

testWhenPairednessIsUnknown() - Method in class ubic.gemma.core.apps.RNASeqDataAddCliTest

U

ubic.gemma.core.apps - package ubic.gemma.core.apps

ubic.gemma.core.loader.entrez.pubmed - package ubic.gemma.core.loader.entrez.pubmed

ubic.gemma.core.metrics - package ubic.gemma.core.metrics

ubic.gemma.core.util - package ubic.gemma.core.util

ubic.gemma.core.util.test - package ubic.gemma.core.util.test

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