Package ubic.gemma.core.ontology.providers

Class GemmaOntologyService

java.lang.Object

ubic.basecode.ontology.jena.AbstractOntologyService

ubic.basecode.ontology.providers.AbstractOntologyService

ubic.gemma.core.ontology.providers.GemmaOntologyService

All Implemented Interfaces:

OntologyService

public class GemmaOntologyService
extends AbstractOntologyService

Ontology created for Gemma. See bug 4312

Author:

paul

Nested Class Summary

Nested classes/interfaces inherited from interface ubic.basecode.ontology.providers.OntologyService

OntologyService.InferenceMode, OntologyService.LanguageLevel

Field Summary

Fields inherited from class ubic.basecode.ontology.jena.AbstractOntologyService

log

Constructor Summary

Constructors

Constructor	Description
GemmaOntologyService()

Method Summary

Modifier and Type	Method	Description
protected String	getCacheName()
String	getOntologyName()
String	getOntologyUrl()
protected boolean	isOntologyEnabled()

Methods inherited from class ubic.basecode.ontology.jena.AbstractOntologyService

cancelInitializationThread, findIndividuals, findResources, findTerm, findUsingAlternativeId, getAdditionalPropertyUris, getAllURIs, getChildren, getDescription, getExcludedWordsFromStemming, getInferenceMode, getLanguageLevel, getName, getParents, getProcessImports, getResource, getTerm, getTermIndividuals, index, initialize, initialize, isEnabled, isInitializationThreadAlive, isInitializationThreadCancelled, isOntologyLoaded, isSearchEnabled, loadModel, loadModelFromStream, loadTermsInNameSpace, setAdditionalPropertyUris, setExcludedWordsFromStemming, setInferenceMode, setLanguageLevel, setProcessImports, setSearchEnabled, startInitializationThread, toString, waitForInitializationThread

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.basecode.ontology.providers.OntologyService

findIndividuals, findResources, findTerm, getChildren, getParents

Constructor Detail

GemmaOntologyService

public GemmaOntologyService()

Method Detail

getOntologyName

public String getOntologyName()

Specified by:

getOntologyName in class AbstractOntologyService

getOntologyUrl

public String getOntologyUrl()

Specified by:

getOntologyUrl in class AbstractOntologyService

isOntologyEnabled

protected boolean isOntologyEnabled()

Specified by:

isOntologyEnabled in class AbstractOntologyService

getCacheName

@Nullable
protected String getCacheName()

Specified by:

getCacheName in class AbstractOntologyService