AncovaTest (Gemma 1.31.5-SNAPSHOT Test API)

java.lang.Object
- org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests
- - ubic.gemma.core.util.test.BaseSpringContextTest
  - - ubic.gemma.core.analysis.expression.diff.BaseAnalyzerConfigurationTest
    - - ubic.gemma.core.analysis.expression.diff.AncovaTest

All Implemented Interfaces:

Aware, InitializingBean, ApplicationContextAware
```
public class AncovaTest
extends BaseAnalyzerConfigurationTest
```
Tests of ANCOVA: using linear models with mixtures of fixed level and continuous parameters. See test/data/stat-tests/README.txt for R code.

Author:

paul

Field Summary
- Fields inherited from class ubic.gemma.core.analysis.expression.diff.BaseAnalyzerConfigurationTest
  expressionDataMatrixService, processedExpressionDataVectorService
- Fields inherited from class ubic.gemma.core.util.test.BaseSpringContextTest
  externalDatabaseService, jdbcTemplate, log, persisterHelper, rule, taxonService, testHelper
- Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests
  applicationContext, logger

Constructor Summary

Constructors
Constructor Description

AncovaTest()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`testAncovaContinuousCovariate()`
`void`	`testAncovaCovariate()`
`void`	`testAncovaTriLevel()`
`void`	`testAncovaTwoway()`
`void`	`testAncovaWithInteraction()`

Methods inherited from class ubic.gemma.core.analysis.expression.diff.BaseAnalyzerConfigurationTest
setUp, tearDown

Methods inherited from class ubic.gemma.core.util.test.BaseSpringContextTest
addTestAnalyses, afterPropertiesSet, countRowsInTable, deleteFromTables, executeSqlScript, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setTestCollectionSize, setUpAuthentication, setUpSecurityContextHolderStrategy, tearDownSecurityContext

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests
setApplicationContext

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- AncovaTest
```
public AncovaTest()
```

Method Detail

testAncovaContinuousCovariate

public void testAncovaContinuousCovariate()

testAncovaCovariate
```
public void testAncovaCovariate()
```

testAncovaTriLevel
```
public void testAncovaTriLevel()
```

testAncovaTwoway
```
public void testAncovaTwoway()
```

testAncovaWithInteraction

public void testAncovaWithInteraction()