Deprecated API

Contents

• Classes
• Methods

Classes

Class	Description
ubic.gemma.core.apps.ArrayDesignProbeRenamerCli	renaming probes is not a good idea in general
ubic.gemma.core.apps.FactorValueMigratorCLI	this will be removed as soon as all the old-style characteristics are migrated
ubic.gemma.core.apps.MeshTermFetcherCli	should not be part of Gemma main code
ubic.gemma.core.apps.RNASeqBatchInfoCli	this should not be necessary and the regular batch population tool can be used instead.
ubic.gemma.core.loader.association.phenotype.CtdDatabaseImporterCli
ubic.gemma.core.loader.association.phenotype.DgaDatabaseImporterCli
ubic.gemma.core.loader.association.phenotype.EvidenceImporterAbstractCLI
ubic.gemma.core.loader.association.phenotype.ExternalDatabaseEvidenceImporterAbstractCLI
ubic.gemma.core.loader.association.phenotype.GwasDatabaseImporterCli
ubic.gemma.core.loader.association.phenotype.OmimDatabaseImporterCli
ubic.gemma.core.loader.association.phenotype.RgdDatabaseImporterCli
ubic.gemma.core.loader.association.phenotype.SfariDatabaseImporterCli

Methods

Method	Description
ubic.gemma.core.util.AbstractCLI.getBean(String, Class<T>)	Use Autowired to specify your dependencies, this is just a wrapper around the current BeanFactory.