DEDVRankEndpoint (Gemma 1.31.5-SNAPSHOT API)

java.lang.Object
- org.springframework.xml.transform.TransformerObjectSupport
- - org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint
  - - ubic.gemma.web.services.AbstractGemmaEndpoint
    - - ubic.gemma.web.services.DEDVRankEndpoint

All Implemented Interfaces:

org.springframework.ws.server.endpoint.PayloadEndpoint
```
public class DEDVRankEndpoint
extends AbstractGemmaEndpoint
```
Given a collection of gene IDs, a collection of experiment IDs, and the method, the service will return a list of genes mapped to a list of space delimited ranks. Each rank in the space delimited result is ordered based on the a list of experiments returned in the field, "ee_ids". The output can be pictured as a matrix where the rows are the genes and the columns are the experiments. (Ranks are per-array based.) Method can be one of the following: MEAN or MAX

Author:

gavin

See Also:

ProcessedExpressionDataVectorDao.RankMethod

Field Summary
- Fields inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint
  DELIMITER, manualAuthenticationService, NAMESPACE_URI, REQUEST, RESPONSE
- Fields inherited from class org.springframework.xml.transform.TransformerObjectSupport
  logger

Constructor Summary

Constructors
Constructor Description

DEDVRankEndpoint()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected Element`	`invokeInternal(Element requestElement, Document document)`	Reads the given `requestElement`, and sends a the response back.
`void`	`setExpressionDataMatrixService(ExpressionDataMatrixService expressionDataMatrixService)`
`void`	`setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)`
`void`	`setGeneService(GeneService geneService)`	Sets the "business service" to delegate to.

Methods inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint
authenticate, buildBadResponse, buildWrapper, encode, getArrayValues, getLastSingleNodeValue, getNodeValue, getOptionalNodeValue, getSingleNodeValue, readReport, readReport, readReport, setLocalName, setManualAuthenticationService, writeReport

Methods inherited from class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint
createDocumentBuilder, createDocumentBuilderFactory, getDocumentElement, invoke, setAlwaysTransform, setExpandEntityReferences, setNamespaceAware, setValidating

Methods inherited from class org.springframework.xml.transform.TransformerObjectSupport
createTransformer, getTransformerFactory, newTransformerFactory, setTransformerFactoryClass, transform

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - DEDVRankEndpoint
```
public DEDVRankEndpoint()
```
- Method Detail
  - setExpressionDataMatrixService
```
public void setExpressionDataMatrixService(ExpressionDataMatrixService expressionDataMatrixService)
```
  - setExpressionExperimentService
```
public void setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)
```
  - setGeneService
```
public void setGeneService(GeneService geneService)
```
    Sets the "business service" to delegate to.
  - invokeInternal
```
protected Element invokeInternal(Element requestElement,
                                 Document document)
```
    Reads the given requestElement, and sends a the response back.
    
    Specified by:
    
    invokeInternal in class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint
    
    Parameters:
    
    requestElement - the contents of the SOAP message as DOM elements
    
    document - a DOM document to be used for constructing Nodes
    
    Returns:
    
    the response element