CoexpressionCache (Gemma 1.31.5-SNAPSHOT API)

All Known Implementing Classes:

CoexpressionCacheImpl
```
public interface CoexpressionCache
```
Cache for coexpression results. Useful caching requires that the query be done at a suitably low stringency, defined by CACHE_QUERY_STRINGENCY, against all data sets.

Author:

Paul

See Also:

CoexpressionQueryQueue

Field Summary

Fields
Modifier and Type Field Description

static int CACHE_QUERY_STRINGENCY
The stringency used to query when populating the cache.

Method Summary

All Methods Instance Methods Abstract Methods
Modifier and Type	Method	Description
`void`	`cacheCoexpression(Long geneId, Collection<CoexpressionValueObject> r)`
`void`	`cacheCoexpression(Map<Long,List<CoexpressionValueObject>> r)`
`void`	`clearCache()`	Remove all elements from the cache.
`List<CoexpressionValueObject>`	`get(Long g)`
`boolean`	`isEnabled()`
`boolean`	`remove(Long id)`
`int`	`remove(Collection<Long> genes)`	Bulk remove from cache.
`void`	`shutdown()`

- Field Detail
  - CACHE_QUERY_STRINGENCY
```
static final int CACHE_QUERY_STRINGENCY
```
    The stringency used to query when populating the cache. This can't be too low or the cache gets gigantic; if someone is querying for data from a single dataset, they would use experiment-first mode.
- Method Detail
  - cacheCoexpression
```
void cacheCoexpression(Long geneId,
                       Collection<CoexpressionValueObject> r)
```
  - cacheCoexpression
```
void cacheCoexpression(Map<Long,List<CoexpressionValueObject>> r)
```
  - clearCache
```
void clearCache()
```
    Remove all elements from the cache.
  - get
```
List<CoexpressionValueObject> get(Long g)
```
    Parameters:
    
    g - gene id
    
    Returns:
    
    results sorted in descending order of support, or null if the gene was not in the cache
  - isEnabled
```
boolean isEnabled()
```
  - remove
```
int remove(Collection<Long> genes)
```
    Bulk remove from cache.
    
    Parameters:
    
    genes - genes
    
    Returns:
    
    number of cache entries affected
  - remove
```
boolean remove(Long id)
```
  - shutdown
```
void shutdown()
```