java.lang.Object
- ubic.gemma.model.genome.sequenceAnalysis.SequenceSimilaritySearchResult

All Implemented Interfaces:: Serializable, Identifiable

Direct Known Subclasses:: BlatResult

public abstract class SequenceSimilaritySearchResult
extends Object
implements Identifiable, Serializable

See Also:: Serialized Form

Constructor Summary

Constructors
Constructor Description

SequenceSimilaritySearchResult()
No-arg constructor added to satisfy javabean contract

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`equals(Object object)`
`Long`	`getId()`
`BioSequence`	`getQuerySequence()`
`ExternalDatabase`	`getSearchedDatabase()`
`PhysicalLocation`	`getTargetAlignedRegion()`
`Chromosome`	`getTargetChromosome()`
`BioSequence`	`getTargetSequence()`
`int`	`hashCode()`
`void`	`setId(Long id)`
`void`	`setQuerySequence(BioSequence querySequence)`
`void`	`setSearchedDatabase(ExternalDatabase searchedDatabase)`
`void`	`setTargetAlignedRegion(PhysicalLocation targetAlignedRegion)`
`void`	`setTargetChromosome(Chromosome targetChromosome)`
`void`	`setTargetSequence(BioSequence targetSequence)`
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - SequenceSimilaritySearchResult
```
public SequenceSimilaritySearchResult()
```
    No-arg constructor added to satisfy javabean contract
- Method Detail
  - equals
```
public boolean equals(Object object)
```
    Overrides:
    
    equals in class Object
    
    Returns:
    
    true if the argument is an SequenceSimilaritySearchResult instance and all identifiers for this entity equal the identifiers of the argument entity. Returns false otherwise.
  - getId
```
public Long getId()
```
    Specified by:
    
    getId in interface Identifiable
  - setId
```
public void setId(Long id)
```
  - getQuerySequence
```
public BioSequence getQuerySequence()
```
  - setQuerySequence
```
public void setQuerySequence(BioSequence querySequence)
```
  - getSearchedDatabase
```
public ExternalDatabase getSearchedDatabase()
```
    Returns:
    
    The database used for the search. This will be null if the comparison was just between two sequences.
  - setSearchedDatabase
```
public void setSearchedDatabase(ExternalDatabase searchedDatabase)
```
  - getTargetAlignedRegion
```
public PhysicalLocation getTargetAlignedRegion()
```
    Returns:
    
    The region of the target spanned by the alignment.
  - setTargetAlignedRegion
```
public void setTargetAlignedRegion(PhysicalLocation targetAlignedRegion)
```
  - getTargetChromosome
```
public Chromosome getTargetChromosome()
```
  - setTargetChromosome
```
public void setTargetChromosome(Chromosome targetChromosome)
```
  - getTargetSequence
```
public BioSequence getTargetSequence()
```
  - setTargetSequence
```
public void setTargetSequence(BioSequence targetSequence)
```
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class Object
    
    Returns:
    
    a hash code based on this entity's identifiers.
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object

Class SequenceSimilaritySearchResult

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

SequenceSimilaritySearchResult

Method Detail

equals

getId

setId

getQuerySequence

setQuerySequence

getSearchedDatabase

setSearchedDatabase

getTargetAlignedRegion

setTargetAlignedRegion

getTargetChromosome

setTargetChromosome

getTargetSequence

setTargetSequence

hashCode

toString