Package ubic.gemma.core.tasks.visualization

Class DifferentialExpressionAnalysisResultSetVisualizationValueObject

java.lang.Object

ubic.gemma.core.tasks.visualization.DifferentialExpressionAnalysisResultSetVisualizationValueObject

All Implemented Interfaces:

Serializable

@ValueObject
public class DifferentialExpressionAnalysisResultSetVisualizationValueObject
extends Object
implements Serializable

This class contains data for a column in metaheatmap visualization.

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
DifferentialExpressionAnalysisResultSetVisualizationValueObject()
DifferentialExpressionAnalysisResultSetVisualizationValueObject(int[] geneGroupSizes)

Method Summary

Modifier and Type	Method	Description
void	addContrastsFactorValue(long factorValueId, String factorValueName)
Long	getAnalysisId()
boolean	getAnalysisNotRun()
String	getBaselineFactorValue()
Long	getBaselineFactorValueId()
List<Long>	getContrastsFactorValueIds()
Map<Long,String>	getContrastsFactorValues()
Long	getDatasetId()
String	getDatasetLink()
String	getDatasetName()
String	getDatasetShortName()
String	getFactorCategory()
String	getFactorDescription()
Long	getFactorId()
String	getFactorName()
List<List<Integer>>	getNumberOfProbes()
int	getNumberOfProbesDiffExpressed()
int	getNumberOfProbesDownRegulated()
int	getNumberOfProbesTotal()
int	getNumberOfProbesUpRegulated()
List<List<Double>>	getqValues()
Long	getResultSetId()
List<List<Double>>	getVisualizationValues()
void	setAnalysisId(Long analysisId)
void	setAnalysisNotRun(boolean analysisNotRun)
void	setBaselineFactorValue(String baselineFactorValue)
void	setBaselineFactorValueId(Long baselineFactorValueId)
void	setContrastsFactorValues(Map<Long,String> contrastsFactorValues)
void	setDatasetId(Long datasetId)
void	setDatasetLink(String datasetLink)
void	setDatasetName(String datasetName)
void	setDatasetShortName(String datasetShortName)
void	setFactorCategory(String name)
void	setFactorDescription(String factorDescription)
void	setFactorId(Long factorId)
void	setFactorName(String factorName)
void	setNumberOfProbes(int geneGroupIndex, int geneIndex, Integer numberOfProbes)
void	setNumberOfProbes(List<List<Integer>> numberOfProbes)
void	setNumberOfProbesDiffExpressed(int numberOfProbesDiffExpressed)
void	setNumberOfProbesDownRegulated(int numberOfProbesDownRegulated)
void	setNumberOfProbesTotal(int numberOfProbesTotal)
void	setNumberOfProbesUpRegulated(int numberOfProbesUpRegulated)
void	setQvalue(int geneGroupIndex, int geneIndex, Double qValue)
void	setqValues(List<List<Double>> qValues)
void	setResultSetId(Long resultSetId)
void	setVisualizationValue(int geneGroupIndex, int geneIndex, Double value)
void	setVisualizationValues(List<List<Double>> visualizationValues)
String	toText()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DifferentialExpressionAnalysisResultSetVisualizationValueObject

public DifferentialExpressionAnalysisResultSetVisualizationValueObject()

DifferentialExpressionAnalysisResultSetVisualizationValueObject

public DifferentialExpressionAnalysisResultSetVisualizationValueObject(int[] geneGroupSizes)

Method Detail

addContrastsFactorValue

public void addContrastsFactorValue(long factorValueId,
                                    String factorValueName)

getAnalysisId

public Long getAnalysisId()

setAnalysisId

public void setAnalysisId(Long analysisId)

getAnalysisNotRun

public boolean getAnalysisNotRun()

setAnalysisNotRun

public void setAnalysisNotRun(boolean analysisNotRun)

getBaselineFactorValue

public String getBaselineFactorValue()

setBaselineFactorValue

public void setBaselineFactorValue(String baselineFactorValue)

getBaselineFactorValueId

public Long getBaselineFactorValueId()

setBaselineFactorValueId

public void setBaselineFactorValueId(Long baselineFactorValueId)

getContrastsFactorValueIds

public List<Long> getContrastsFactorValueIds()

getContrastsFactorValues

public Map<Long,String> getContrastsFactorValues()

setContrastsFactorValues

public void setContrastsFactorValues(Map<Long,String> contrastsFactorValues)

getDatasetId

public Long getDatasetId()

setDatasetId

public void setDatasetId(Long datasetId)

getDatasetLink

public String getDatasetLink()

setDatasetLink

public void setDatasetLink(String datasetLink)

getDatasetName

public String getDatasetName()

setDatasetName

public void setDatasetName(String datasetName)

getDatasetShortName

public String getDatasetShortName()

setDatasetShortName

public void setDatasetShortName(String datasetShortName)

getFactorCategory

public String getFactorCategory()

setFactorCategory

public void setFactorCategory(String name)

getFactorDescription

public String getFactorDescription()

setFactorDescription

public void setFactorDescription(String factorDescription)

getFactorId

public Long getFactorId()

setFactorId

public void setFactorId(Long factorId)

getFactorName

public String getFactorName()

setFactorName

public void setFactorName(String factorName)

getNumberOfProbes

public List<List<Integer>> getNumberOfProbes()

setNumberOfProbes

public void setNumberOfProbes(List<List<Integer>> numberOfProbes)

getNumberOfProbesDiffExpressed

public int getNumberOfProbesDiffExpressed()

setNumberOfProbesDiffExpressed

public void setNumberOfProbesDiffExpressed(int numberOfProbesDiffExpressed)

getNumberOfProbesDownRegulated

public int getNumberOfProbesDownRegulated()

setNumberOfProbesDownRegulated

public void setNumberOfProbesDownRegulated(int numberOfProbesDownRegulated)

getNumberOfProbesTotal

public int getNumberOfProbesTotal()

setNumberOfProbesTotal

public void setNumberOfProbesTotal(int numberOfProbesTotal)

getNumberOfProbesUpRegulated

public int getNumberOfProbesUpRegulated()

setNumberOfProbesUpRegulated

public void setNumberOfProbesUpRegulated(int numberOfProbesUpRegulated)

getqValues

public List<List<Double>> getqValues()

setqValues

public void setqValues(List<List<Double>> qValues)

getResultSetId

public Long getResultSetId()

setResultSetId

public void setResultSetId(Long resultSetId)

getVisualizationValues

public List<List<Double>> getVisualizationValues()

setVisualizationValues

public void setVisualizationValues(List<List<Double>> visualizationValues)

setNumberOfProbes

public void setNumberOfProbes(int geneGroupIndex,
                              int geneIndex,
                              Integer numberOfProbes)

setQvalue

public void setQvalue(int geneGroupIndex,
                      int geneIndex,
                      Double qValue)

setVisualizationValue

public void setVisualizationValue(int geneGroupIndex,
                                  int geneIndex,
                                  Double value)

toText

public String toText()