Package ubic.gemma.model.expression.arrayDesign

Class ArrayDesignServiceTest

java.lang.Object

org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

ubic.gemma.core.util.test.BaseSpringContextTest

ubic.gemma.model.expression.arrayDesign.ArrayDesignServiceTest

All Implemented Interfaces:

Aware, InitializingBean, ApplicationContextAware

public class ArrayDesignServiceTest
extends BaseSpringContextTest

Author:

pavlidis

Field Summary

Fields inherited from class ubic.gemma.core.util.test.BaseSpringContextTest

externalDatabaseService, jdbcTemplate, log, persisterHelper, rule, taxonService, testHelper

Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

applicationContext, logger

Constructor Summary

Constructors

Constructor	Description
ArrayDesignServiceTest()

Method Summary

Modifier and Type	Method	Description
void	setUp()
void	testCascadeCreateCompositeSequences()
void	testCountAll()
void	testDelete()
void	testFindWithExternalReference()
void	testFindWithExternalReferenceNotFound()
void	testGetExpressionExperimentsById()
void	testGetTaxaMultipleTaxonForArray()	Test retrieving multiple taxa for an arraydesign where hibernate query is not restricted to return just 1 taxon.
void	testGetTaxaOneTaxonForArray()
void	testGetTaxon()
void	testLoadAllValueObjects()
void	testLoadAllValueObjectsOneTaxon()	Test to ensure that if one taxon is present on an array only 1 string is returned with taxon name
void	testLoadCompositeSequences()
void	testNumBioSequencesById()
void	testNumBlatResultsById()
void	testNumCompositeSequencesArrayDesign()
void	testNumGenesById()
void	testThaw()
void	testUpdateSubsumingStatus()
void	testUpdateSubsumingStatusTrue()

Methods inherited from class ubic.gemma.core.util.test.BaseSpringContextTest

addTestAnalyses, afterPropertiesSet, countRowsInTable, deleteFromTables, executeSqlScript, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setPersisterHelper, setTaxonService, setTestCollectionSize, setUpAuthentication, setUpSecurityContextHolderStrategy, tearDownSecurityContext

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

setApplicationContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ArrayDesignServiceTest

public ArrayDesignServiceTest()

Method Detail

setUp

public void setUp()
           throws Exception

Throws:

Exception

testCascadeCreateCompositeSequences

public void testCascadeCreateCompositeSequences()

testCountAll

public void testCountAll()

testDelete

public void testDelete()

testFindWithExternalReference

public void testFindWithExternalReference()

testFindWithExternalReferenceNotFound

public void testFindWithExternalReferenceNotFound()

testGetExpressionExperimentsById

public void testGetExpressionExperimentsById()

testGetTaxaMultipleTaxonForArray

public void testGetTaxaMultipleTaxonForArray()

Test retrieving multiple taxa for an arraydesign where hibernate query is not restricted to return just 1 taxon.

testGetTaxaOneTaxonForArray

public void testGetTaxaOneTaxonForArray()

testGetTaxon

public void testGetTaxon()

testLoadAllValueObjects

public void testLoadAllValueObjects()

testLoadAllValueObjectsOneTaxon

public void testLoadAllValueObjectsOneTaxon()

Test to ensure that if one taxon is present on an array only 1 string is returned with taxon name

testLoadCompositeSequences

public void testLoadCompositeSequences()

testNumBioSequencesById

public void testNumBioSequencesById()

testNumBlatResultsById

public void testNumBlatResultsById()

testNumCompositeSequencesArrayDesign

public void testNumCompositeSequencesArrayDesign()

testNumGenesById

public void testNumGenesById()

testThaw

public void testThaw()

testUpdateSubsumingStatus

public void testUpdateSubsumingStatus()

testUpdateSubsumingStatusTrue

public void testUpdateSubsumingStatusTrue()