Package ubic.gemma.core.analysis.expression.diff

Class BaselineDetectionTest

java.lang.Object

org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

ubic.gemma.core.util.test.BaseSpringContextTest

ubic.gemma.core.loader.expression.geo.AbstractGeoServiceTest

ubic.gemma.core.analysis.expression.diff.BaselineDetectionTest

All Implemented Interfaces:

Aware, InitializingBean, ApplicationContextAware

public class BaselineDetectionTest
extends AbstractGeoServiceTest

Author:

paul

Field Summary

Fields

Modifier and Type	Field	Description
protected GeoService	geoService

Fields inherited from class ubic.gemma.core.util.test.BaseSpringContextTest

externalDatabaseService, jdbcTemplate, log, persisterHelper, rule, taxonService, testHelper

Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

applicationContext, logger

Constructor Summary

Constructors

Constructor	Description
BaselineDetectionTest()

Method Summary

Modifier and Type	Method	Description
void	setUp()
void	tearDown()
void	testFetchAndLoadGSE18162()

Methods inherited from class ubic.gemma.core.loader.expression.geo.AbstractGeoServiceTest

getTestFileBasePath, getTestFileBasePath

Methods inherited from class ubic.gemma.core.util.test.BaseSpringContextTest

addTestAnalyses, afterPropertiesSet, countRowsInTable, deleteFromTables, executeSqlScript, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setPersisterHelper, setTaxonService, setTestCollectionSize, setUpAuthentication, setUpSecurityContextHolderStrategy, tearDownSecurityContext

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

setApplicationContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

geoService

@Autowired
protected GeoService geoService

Constructor Detail

BaselineDetectionTest

public BaselineDetectionTest()

Method Detail

setUp

public void setUp()
           throws Exception

Throws:

Exception

tearDown

public void tearDown()

testFetchAndLoadGSE18162

public void testFetchAndLoadGSE18162()