Package ubic.gemma.web.controller.expression.designElement

Class CompositeSequenceController

java.lang.Object

ubic.gemma.web.controller.BaseController

ubic.gemma.web.controller.expression.designElement.CompositeSequenceController

@Controller
@RequestMapping("/compositeSequence")
public class CompositeSequenceController
extends BaseController

Author:

joseph, paul

Field Summary

Fields inherited from class ubic.gemma.web.controller.BaseController

log

Constructor Summary

Constructors

Constructor	Description
CompositeSequenceController()

Method Summary

Modifier and Type	Method	Description
ModelAndView	filter(javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response)
Collection<ubic.gemma.core.analysis.sequence.CompositeSequenceMapValueObject>	getCsSummaries(Collection<Long> ids)	Exposed for AJAX calls (Probe browser) FIXME can probably remove soon since we should use getGeneCsSummaries? Might be another use for this
Collection<ubic.gemma.core.analysis.sequence.CompositeSequenceMapValueObject>	getGeneCsSummaries(Long geneId)	Exposed for AJAX calls (Elements tab on gene details page)
Collection<ubic.gemma.core.analysis.sequence.GeneMappingSummary>	getGeneMappingSummary(EntityDelegator<ubic.gemma.model.expression.designElement.CompositeSequence> csd)	Exposed for AJAX calls.
void	initBinder(WebDataBinder binder)
Collection<ubic.gemma.core.analysis.sequence.CompositeSequenceMapValueObject>	search(String searchString, String arrayDesignId)
ModelAndView	show(javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response)

Methods inherited from class ubic.gemma.web.controller.BaseController

addMessage, getMessageUtil, getText, getText, saveMessage, saveMessage, sendConfirmationEmail, setMailEngine, setMessageSource, setMessageUtil

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompositeSequenceController

public CompositeSequenceController()

Method Detail

filter

@RequestMapping("/filter")
public ModelAndView filter(javax.servlet.http.HttpServletRequest request,
                           javax.servlet.http.HttpServletResponse response)

getCsSummaries

public Collection<ubic.gemma.core.analysis.sequence.CompositeSequenceMapValueObject> getCsSummaries(Collection<Long> ids)

Exposed for AJAX calls (Probe browser) FIXME can probably remove soon since we should use getGeneCsSummaries? Might be another use for this

getGeneCsSummaries

public Collection<ubic.gemma.core.analysis.sequence.CompositeSequenceMapValueObject> getGeneCsSummaries(Long geneId)

Exposed for AJAX calls (Elements tab on gene details page)

getGeneMappingSummary

public Collection<ubic.gemma.core.analysis.sequence.GeneMappingSummary> getGeneMappingSummary(EntityDelegator<ubic.gemma.model.expression.designElement.CompositeSequence> csd)

Exposed for AJAX calls.

initBinder

@InitBinder
public void initBinder(WebDataBinder binder)

search

public Collection<ubic.gemma.core.analysis.sequence.CompositeSequenceMapValueObject> search(String searchString,
                                                                                            String arrayDesignId)
                                                                                     throws ubic.gemma.core.search.SearchException

Throws:

ubic.gemma.core.search.SearchException

show

@RequestMapping("/show")
public ModelAndView show(javax.servlet.http.HttpServletRequest request,
                         javax.servlet.http.HttpServletResponse response)