Package ubic.gemma.core.ontology.providers

Class PatoOntologyService

java.lang.Object

ubic.basecode.ontology.jena.AbstractOntologyService

ubic.basecode.ontology.jena.AbstractOntologyMemoryBackedService

ubic.gemma.core.ontology.providers.PatoOntologyService

All Implemented Interfaces:

OntologyService

public class PatoOntologyService
extends AbstractOntologyMemoryBackedService

Nested Class Summary

Nested classes/interfaces inherited from interface ubic.basecode.ontology.providers.OntologyService

OntologyService.InferenceMode, OntologyService.LanguageLevel

Field Summary

Fields inherited from class ubic.basecode.ontology.jena.AbstractOntologyService

log

Constructor Summary

Constructors

Constructor	Description
PatoOntologyService()

Method Summary

Modifier and Type	Method	Description
protected String	getOntologyName()
protected String	getOntologyUrl()

Methods inherited from class ubic.basecode.ontology.jena.AbstractOntologyMemoryBackedService

loadModel, loadModelFromStream

Methods inherited from class ubic.basecode.ontology.jena.AbstractOntologyService

cancelInitializationThread, findIndividuals, findResources, findTerm, findUsingAlternativeId, getAdditionalPropertyUris, getAllURIs, getCacheName, getChildren, getDescription, getInferenceMode, getLanguageLevel, getName, getParents, getProcessImports, getResource, getTerm, getTermIndividuals, index, initialize, initialize, isEnabled, isInitializationThreadAlive, isInitializationThreadCancelled, isOntologyLoaded, isSearchEnabled, loadTermsInNameSpace, setAdditionalPropertyUris, setInferenceMode, setLanguageLevel, setProcessImports, setSearchEnabled, startInitializationThread, toString, waitForInitializationThread

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.basecode.ontology.providers.OntologyService

findIndividuals, findResources, findTerm, getChildren, getParents

Constructor Detail

PatoOntologyService

public PatoOntologyService()

Method Detail

getOntologyName

protected String getOntologyName()

Specified by:

getOntologyName in class AbstractOntologyService

getOntologyUrl

protected String getOntologyUrl()

Overrides:

getOntologyUrl in class AbstractOntologyMemoryBackedService