Hierarchy For All Packages

Package Hierarchies:

• org.springframework.security.test.context,
• org.springframework.security.test.context.annotation,
• org.springframework.security.test.context.support,
• org.springframework.security.test.web.servlet.request,
• org.springframework.security.test.web.servlet.response,
• org.springframework.security.test.web.support,
• ubic.gemma.core.analysis.expression.coexpression.links,
• ubic.gemma.core.analysis.expression.diff,
• ubic.gemma.core.analysis.preprocess,
• ubic.gemma.core.analysis.preprocess.batcheffects,
• ubic.gemma.core.analysis.preprocess.svd,
• ubic.gemma.core.analysis.report,
• ubic.gemma.core.analysis.sequence,
• ubic.gemma.core.analysis.service,
• ubic.gemma.core.annotation.reference,
• ubic.gemma.core.apps,
• ubic.gemma.core.datastructure.matrix,
• ubic.gemma.core.externalDb,
• ubic.gemma.core.image.aba,
• ubic.gemma.core.job,
• ubic.gemma.core.loader.association,
• ubic.gemma.core.loader.association.phenotype,
• ubic.gemma.core.loader.entrez,
• ubic.gemma.core.loader.entrez.pubmed,
• ubic.gemma.core.loader.expression,
• ubic.gemma.core.loader.expression.arrayDesign,
• ubic.gemma.core.loader.expression.arrayExpress,
• ubic.gemma.core.loader.expression.geo,
• ubic.gemma.core.loader.expression.geo.fetcher,
• ubic.gemma.core.loader.expression.geo.service,
• ubic.gemma.core.loader.expression.simple,
• ubic.gemma.core.loader.genome,
• ubic.gemma.core.loader.genome.gene,
• ubic.gemma.core.loader.genome.gene.ncbi,
• ubic.gemma.core.loader.genome.gene.ncbi.homology,
• ubic.gemma.core.loader.genome.taxon,
• ubic.gemma.core.loader.util,
• ubic.gemma.core.loader.util.fetcher,
• ubic.gemma.core.metrics,
• ubic.gemma.core.ontology,
• ubic.gemma.core.ontology.providers,
• ubic.gemma.core.search,
• ubic.gemma.core.search.lucene,
• ubic.gemma.core.search.source,
• ubic.gemma.core.security,
• ubic.gemma.core.security.audit,
• ubic.gemma.core.security.authentication,
• ubic.gemma.core.security.authorization,
• ubic.gemma.core.security.authorization.acl,
• ubic.gemma.core.security.principal,
• ubic.gemma.core.util,
• ubic.gemma.core.util.biomart,
• ubic.gemma.core.util.progress,
• ubic.gemma.core.util.test,
• ubic.gemma.core.util.test.category,
• ubic.gemma.core.util.test.suite,
• ubic.gemma.model.analysis,
• ubic.gemma.model.analysis.expression.coexpression,
• ubic.gemma.model.association.coexpression,
• ubic.gemma.model.association.phenotype,
• ubic.gemma.model.common.auditAndSecurity,
• ubic.gemma.model.common.auditAndSecurity.eventType,
• ubic.gemma.model.common.description,
• ubic.gemma.model.common.search,
• ubic.gemma.model.expression,
• ubic.gemma.model.expression.arrayDesign,
• ubic.gemma.model.expression.bioAssay,
• ubic.gemma.model.expression.bioAssayData,
• ubic.gemma.model.expression.biomaterial,
• ubic.gemma.model.expression.experiment,
• ubic.gemma.model.genome,
• ubic.gemma.model.genome.biosequence,
• ubic.gemma.model.genome.gene,
• ubic.gemma.model.genome.gene.phenotype.valueObject,
• ubic.gemma.model.genome.sequenceAnalysis,
• ubic.gemma.persistence,
• ubic.gemma.persistence.retry,
• ubic.gemma.persistence.service,
• ubic.gemma.persistence.service.analysis.expression.diff,
• ubic.gemma.persistence.service.common.auditAndSecurity,
• ubic.gemma.persistence.service.common.description,
• ubic.gemma.persistence.service.common.quantitationtype,
• ubic.gemma.persistence.service.expression.arrayDesign,
• ubic.gemma.persistence.service.expression.bioAssayData,
• ubic.gemma.persistence.service.expression.biomaterial,
• ubic.gemma.persistence.service.expression.designElement,
• ubic.gemma.persistence.service.expression.experiment,
• ubic.gemma.persistence.service.genome,
• ubic.gemma.persistence.util,
• ubic.gemma.rest,
• ubic.gemma.rest.analytics.ga4,
• ubic.gemma.rest.providers,
• ubic.gemma.rest.serializers,
• ubic.gemma.rest.servlet,
• ubic.gemma.rest.util,
• ubic.gemma.rest.util.args,
• ubic.gemma.web.controller,
• ubic.gemma.web.controller.common.auditAndSecurity,
• ubic.gemma.web.controller.common.description.bibref,
• ubic.gemma.web.controller.common.rss,
• ubic.gemma.web.controller.diff,
• ubic.gemma.web.controller.expression,
• ubic.gemma.web.controller.expression.arrayDesign,
• ubic.gemma.web.controller.expression.experiment,
• ubic.gemma.web.controller.security,
• ubic.gemma.web.logging,
• ubic.gemma.web.remote,
• ubic.gemma.web.scheduler,
• ubic.gemma.web.services,
• ubic.gemma.web.util,
• ubic.gemma.web.util.dwr,
• ubic.gemma.web.util.upload

Class Hierarchy

• java.lang.Object
  • org.assertj.core.api.AbstractAssert<SELF,ACTUAL> (implements org.assertj.core.api.Assert<SELF,ACTUAL>)
    • ubic.gemma.rest.util.ErrorsAssert
    • ubic.gemma.rest.util.ResponseAssert
  • ubic.gemma.persistence.util.AbstractAsyncFactoryBean<T> (implements ubic.gemma.persistence.util.AsyncFactoryBean<T>, org.springframework.beans.factory.DisposableBean)
    • ubic.gemma.persistence.util.AsyncBeanAutowiringTest.MyService2Factory
    • ubic.gemma.persistence.util.AsyncBeanAutowiringTest.MyServiceFactory
    • ubic.gemma.persistence.util.AsyncFactoryTest.MyServiceFactory
    • ubic.gemma.persistence.util.AsyncSingletonFactoryTest.MyServiceFactory
  • ubic.gemma.persistence.service.AbstractDao<T> (implements ubic.gemma.persistence.service.BaseDao<T>)
    • ubic.gemma.persistence.service.AbstractDaoTest.MyDao
  • ubic.gemma.persistence.service.AbstractDaoTest
  • ubic.gemma.persistence.service.AbstractDaoTest.MyEntity (implements ubic.gemma.model.common.Identifiable)
  • ubic.gemma.web.util.dwr.AbstractDwrReplyParser
    • ubic.gemma.web.util.dwr.AbstractDwrReplyMatchers
      • ubic.gemma.web.util.dwr.DwrCallbackMatchers
      • ubic.gemma.web.util.dwr.DwrExceptionMatchers
    • ubic.gemma.web.util.dwr.DwrCallbackHandler<T> (implements org.springframework.test.web.servlet.ResultHandler)
    • ubic.gemma.web.util.dwr.DwrExceptionHandler (implements org.springframework.test.web.servlet.ResultHandler)
  • ubic.gemma.core.analysis.service.AbstractFileServiceTest
  • org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests (implements org.springframework.context.ApplicationContextAware)
    • ubic.gemma.persistence.service.AbstractFilteringVoEnabledDaoTest
    • org.springframework.test.context.junit4.AbstractTransactionalJUnit4SpringContextTests
      • ubic.gemma.core.util.test.BaseDatabaseTest
        • ubic.gemma.persistence.service.AbstractServiceTest
        • ubic.gemma.persistence.service.expression.arrayDesign.ArrayDesignDaoTest
        • ubic.gemma.model.common.auditAndSecurity.AuditEventDaoTest
        • ubic.gemma.persistence.service.expression.biomaterial.BioMaterialDaoTest
        • ubic.gemma.persistence.service.expression.experiment.BlacklistedEntityDaoImplTest
        • ubic.gemma.persistence.service.common.description.CharacteristicDaoImplTest
        • ubic.gemma.persistence.service.expression.designElement.CompositeSequenceDaoTest
        • ubic.gemma.persistence.service.common.auditAndSecurity.CuratableDaoTest
        • ubic.gemma.persistence.service.analysis.expression.diff.DifferentialExpressionAnalysisDaoTest
        • ubic.gemma.persistence.service.analysis.expression.diff.DifferentialExpressionResultDaoTest
        • ubic.gemma.persistence.service.expression.experiment.ExperimentalFactorDaoTest
        • ubic.gemma.persistence.service.analysis.expression.diff.ExpressionAnalysisResultSetDaoTest
        • ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentDaoTest
        • ubic.gemma.persistence.service.expression.experiment.FactorValueDaoTest
        • ubic.gemma.model.expression.experiment.FactorValueServiceTest
        • ubic.gemma.persistence.service.genome.GeneDaoTest
        • ubic.gemma.core.util.test.HibernateConfigTest
        • ubic.gemma.core.search.source.HibernateSearchSourceTest
        • ubic.gemma.persistence.service.expression.bioAssayData.ProcessedExpressionDataVectorDaoTest
        • ubic.gemma.persistence.service.common.quantitationtype.QuantitationTypeDaoTest
        • ubic.gemma.persistence.service.expression.bioAssayData.RawAndProcessedExpressionDataVectorDaoTest
        • ubic.gemma.persistence.service.expression.bioAssayData.RawExpressionDataVectorDaoTest
        • ubic.gemma.core.security.authentication.UserManagerTest
    • ubic.gemma.rest.AnnotationsWebServiceTest
    • ubic.gemma.persistence.util.AsyncBeanAutowiringTest
    • ubic.gemma.persistence.util.AsyncFactoryTest
    • ubic.gemma.persistence.util.AsyncSingletonFactoryTest
    • ubic.gemma.core.util.test.BaseCliTest
      • ubic.gemma.core.apps.ArrayDesignMergeCliTest
      • ubic.gemma.core.apps.ExternalDatabaseUpdaterCliTest
      • ubic.gemma.core.apps.FactorValueMigratorCLITest
      • ubic.gemma.core.apps.FindObsoleteTermsCliTest
      • ubic.gemma.core.apps.NCBIGene2GOAssociationLoaderCLITest
      • ubic.gemma.core.apps.RNASeqDataAddCliTest
    • ubic.gemma.core.util.test.BaseSpringContextTest (implements org.springframework.beans.factory.InitializingBean)
      • ubic.gemma.core.loader.expression.arrayDesign.AbstractArrayDesignProcessingTest
        • ubic.gemma.core.loader.expression.arrayDesign.ArrayDesignSequenceAlignmentandMappingTest
        • ubic.gemma.core.loader.expression.arrayDesign.ArrayDesignSequenceProcessorFastacmdTest
      • ubic.gemma.persistence.service.AbstractDaoIntegrationTest
      • ubic.gemma.core.loader.expression.geo.AbstractGeoServiceTest
        • ubic.gemma.core.loader.expression.arrayDesign.ArrayDesignSequenceProcessorTest
        • ubic.gemma.core.analysis.expression.diff.BaselineDetectionTest
        • ubic.gemma.core.analysis.preprocess.batcheffects.BatchInfoPopulationServiceIntegrationTest
        • ubic.gemma.core.analysis.service.CompositeSequenceGeneMapperServiceTest
        • ubic.gemma.core.analysis.expression.diff.ContinuousVariableDiffExTest
        • ubic.gemma.core.loader.expression.DataUpdaterTest
        • ubic.gemma.model.expression.bioAssayData.DesignElementDataVectorServiceTest
        • ubic.gemma.core.analysis.expression.diff.DifferentialExpressionAnalyzerServiceTest
        • ubic.gemma.core.analysis.expression.diff.DiffExMetaAnalyzerServiceTest
        • ubic.gemma.core.analysis.expression.diff.DiffExTest
        • ubic.gemma.core.analysis.expression.diff.DiffExWithInvalidInteraction2Test
        • ubic.gemma.core.analysis.expression.diff.DiffExWithInvalidInteractionTest
        • ubic.gemma.core.loader.expression.ExonArrayDataAddIntegrationTest
        • ubic.gemma.core.datastructure.matrix.ExperimentalDesignWriterTest
        • ubic.gemma.core.datastructure.matrix.ExpressionDataDoubleMatrixTest
        • ubic.gemma.core.analysis.preprocess.batcheffects.ExpressionExperimentBatchCorrectionServiceTest
        • ubic.gemma.core.loader.expression.ExpressionExperimentPlatformSwitchTest
        • ubic.gemma.core.loader.expression.geo.service.GeoDatasetServiceTest
        • ubic.gemma.core.loader.expression.geo.service.GeoPlatformServiceTest
        • ubic.gemma.core.analysis.expression.diff.LowVarianceDataTest
        • ubic.gemma.core.analysis.preprocess.MeanVarianceServiceTest
        • ubic.gemma.core.analysis.preprocess.OutlierDetectionServiceTest
        • ubic.gemma.core.analysis.preprocess.ProcessedExpressionDataCreateServiceTest
        • ubic.gemma.model.expression.bioAssayData.ProcessedExpressionDataVectorServiceTest
        • ubic.gemma.core.analysis.preprocess.batcheffects.RNASeqBatchInfoPopulationTest
        • ubic.gemma.core.analysis.expression.diff.SubsettedAnalysis2Test
        • ubic.gemma.core.analysis.expression.diff.SubsettedAnalysis3Test
        • ubic.gemma.core.analysis.preprocess.svd.SVDServiceImplTest
        • ubic.gemma.core.analysis.expression.diff.TwoWayAnovaWithInteractionsTest2
        • ubic.gemma.core.analysis.preprocess.VectorMergingServiceTest
      • ubic.gemma.core.security.authorization.acl.AclAdviceTest
      • ubic.gemma.core.security.authorization.acl.AclAuthorizationTest
      • ubic.gemma.core.security.authorization.acl.AclCollectionBeforeTest
      • ubic.gemma.persistence.util.AclCriteriaUtilsTest
      • ubic.gemma.persistence.util.AclQueryUtilsTest
      • ubic.gemma.core.image.aba.AllenBrainAtlasServiceTest
      • ubic.gemma.rest.AnalysisResultSetsWebServiceTest
      • ubic.gemma.core.loader.expression.arrayDesign.ArrayDesignMergeServiceTest
      • ubic.gemma.core.analysis.report.ArrayDesignReportServiceTest
      • ubic.gemma.model.expression.arrayDesign.ArrayDesignServiceTest
      • ubic.gemma.core.security.audit.AuditAdviceTest
      • ubic.gemma.model.common.auditAndSecurity.AuditEventServiceTest
      • ubic.gemma.model.common.auditAndSecurity.AuditTrailDaoTest
      • ubic.gemma.model.common.auditAndSecurity.AuditTrailServiceImplTest
      • ubic.gemma.core.analysis.expression.diff.BaseAnalyzerConfigurationTest
        • ubic.gemma.core.analysis.expression.diff.AncovaTest
        • ubic.gemma.core.analysis.expression.diff.DifferentialExpressionAnalysisHelperServiceTest
        • ubic.gemma.core.analysis.expression.diff.DifferentialExpressionAnalyzerTest
        • ubic.gemma.core.analysis.expression.diff.OneWayAnovaAnalyzerTest
        • ubic.gemma.core.analysis.expression.diff.SubsettedAnalysisTest
        • ubic.gemma.core.analysis.expression.diff.TTestAnalyzerTest
        • ubic.gemma.core.analysis.expression.diff.TwoWayAnovaWithInteractionsAnalyzerTest
        • ubic.gemma.core.analysis.expression.diff.TwoWayAnovaWithoutInteractionsAnalyzerTest
      • ubic.gemma.web.util.BaseSpringWebTest
        • ubic.gemma.web.controller.expression.arrayDesign.ArrayDesignControllerTest
        • ubic.gemma.web.remote.AuditControllerTest
        • ubic.gemma.web.controller.common.description.bibref.BibRefControllerTest
        • ubic.gemma.web.controller.expression.CuratableValueObjectTest
        • ubic.gemma.web.controller.ErrorPagesTest
        • ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest
        • ubic.gemma.web.controller.expression.experiment.ExpressionExperimentControllerTest
        • ubic.gemma.web.util.MessageSourceTest
        • ubic.gemma.web.controller.common.description.bibref.PubMedQueryControllerTest
        • ubic.gemma.web.controller.common.rss.RssFeedControllerTest
        • ubic.gemma.web.scheduler.SchedulerSecurityTest
        • ubic.gemma.web.controller.security.SecurityControllerTest
        • ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest
        • ubic.gemma.web.controller.TaskRunningTest
      • ubic.gemma.core.annotation.reference.BibliographicReferenceServiceImplTest
      • ubic.gemma.core.annotation.reference.BibliographicReferenceServiceTest
      • ubic.gemma.model.expression.bioAssay.BioAssayServiceTest
      • ubic.gemma.model.expression.biomaterial.BioMaterialServiceTest
      • ubic.gemma.model.genome.BioSequencePersistTest
      • ubic.gemma.persistence.service.expression.experiment.BlacklistedEntityServiceTest
      • ubic.gemma.model.expression.BlacklistTest
      • ubic.gemma.model.genome.sequenceAnalysis.BlatAssociationServiceTest
      • ubic.gemma.model.genome.sequenceAnalysis.BlatResultServiceTest
      • ubic.gemma.model.common.description.CharacteristicServiceTest
      • ubic.gemma.persistence.service.expression.designElement.CompositeSequenceServiceTest
      • ubic.gemma.model.common.description.DatabaseEntryDaoImplTest
      • ubic.gemma.rest.DatasetsRestTest
      • ubic.gemma.model.analysis.DifferentialExpressionAnalysisServiceTest
      • ubic.gemma.core.job.ExecutingTaskTest
      • ubic.gemma.core.loader.expression.simple.ExperimentalDesignImportDuplicateValueTest
      • ubic.gemma.core.loader.expression.simple.ExperimentalDesignImporterTest
      • ubic.gemma.persistence.service.analysis.expression.diff.ExpressionAnalysisResultSetServiceTest
      • ubic.gemma.core.datastructure.matrix.ExpressionDataMatrixColumnSortTest
      • ubic.gemma.model.expression.experiment.ExpressionExperimentDeleteTest
      • ubic.gemma.core.analysis.report.ExpressionExperimentReportServiceTest
      • ubic.gemma.model.expression.experiment.ExpressionExperimentServiceIntegrationTest
      • ubic.gemma.model.expression.experiment.ExpressionExperimentSetServiceTest
      • ubic.gemma.model.expression.experiment.ExpressionExperimentSetValueObjectHelperTest
      • ubic.gemma.model.expression.ExpressionExperimentSubSetServiceTest
      • ubic.gemma.persistence.service.common.description.ExternalDatabaseServiceTest
      • ubic.gemma.core.loader.genome.gene.ExternalFileGeneLoaderServiceTest
      • ubic.gemma.model.expression.experiment.FactorValueServiceIntegrationTest
      • ubic.gemma.persistence.service.FilteringVoEnabledServiceIntegrationTest
      • ubic.gemma.model.association.coexpression.Gene2GeneCoexpressionServiceTest
      • ubic.gemma.model.analysis.GeneDiffExMetaAnalysisServiceTest
      • ubic.gemma.core.analysis.service.GeneMultifunctionalityPopulationServiceTest
      • ubic.gemma.model.genome.gene.GeneSearchTest
      • ubic.gemma.model.genome.gene.GeneServiceTest
      • ubic.gemma.model.genome.gene.GeneSetServiceTest
      • ubic.gemma.model.genome.gene.GeneSetValueObjectHelperTest
      • ubic.gemma.persistence.GenomePersisterTest
      • ubic.gemma.core.loader.expression.geo.service.GeoBrowserServiceTest
      • ubic.gemma.core.loader.expression.geo.GeoConverterTest
      • ubic.gemma.core.analysis.expression.coexpression.links.LinkAnalysisServiceTest
      • ubic.gemma.core.security.authentication.ManualAuthenticationProcessingTest
      • ubic.gemma.core.loader.association.NCBIGene2GOAssociationParserTest
      • ubic.gemma.core.loader.genome.gene.ncbi.NCBIGeneLoadingTest
      • ubic.gemma.persistence.PersisterTest
      • ubic.gemma.model.association.phenotype.PhenotypeAssociationTest
      • ubic.gemma.core.loader.association.phenotype.PhenotypeImportingTest
      • ubic.gemma.rest.PlatformsWebServiceTest
      • ubic.gemma.core.security.principal.PrincipalTest
      • ubic.gemma.persistence.retry.RetryTest
      • ubic.gemma.rest.RootWebServiceTest
      • ubic.gemma.core.analysis.preprocess.SampleCoexpressionAnalysisServiceTest
      • ubic.gemma.core.search.SearchServiceIntegrationTest
      • ubic.gemma.core.security.authorization.SecureValueObjectAuthorizationTest
      • ubic.gemma.core.security.authorization.SecurityServiceTest
      • ubic.gemma.core.loader.expression.simple.SimpleExpressionDataLoaderServiceTest
      • ubic.gemma.core.analysis.preprocess.SplitExperimentTest
      • ubic.gemma.core.util.StrictBeanDefinitionValidatorTest
      • ubic.gemma.persistence.service.TableMaintenanceUtilIntegrationTest
      • ubic.gemma.rest.TaxaWebServiceTest
      • ubic.gemma.core.loader.genome.taxon.TaxonLoaderTest
      • ubic.gemma.model.genome.TaxonServiceImplTest
      • ubic.gemma.core.util.TaxonUtilityTest
      • ubic.gemma.core.analysis.preprocess.TwoChannelMissingValuesTest
      • ubic.gemma.core.analysis.expression.diff.TwoWayAnovaWithInteractionTest2
      • ubic.gemma.core.security.UserGroupServiceTest
      • ubic.gemma.core.analysis.report.WhatsNewServiceTest
    • ubic.gemma.web.util.BaseWebTest (implements org.springframework.beans.factory.InitializingBean)
      • ubic.gemma.web.controller.diff.DifferentialExpressionAnalysisControllerTest
      • ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest
      • ubic.gemma.web.controller.OntologyControllerTest
    • ubic.gemma.core.util.BuildInfoTest
    • ubic.gemma.rest.servlet.CorsFilterTest
    • ubic.gemma.core.search.source.DatabaseSearchSourceTest
    • ubic.gemma.core.analysis.service.ExpressionDataFileServiceTest
    • ubic.gemma.model.expression.experiment.ExpressionExperimentServiceImplTest
    • ubic.gemma.model.expression.experiment.ExpressionExperimentServiceTest
    • ubic.gemma.core.apps.FactorValueMigratorServiceTest
    • ubic.gemma.core.ontology.FactorValueOntologyServiceTest
    • ubic.gemma.rest.serializers.FactorValueValueObjectSerializerTest
    • ubic.gemma.core.ontology.GemmaAndExperimentalFactorOntologyTest
    • ubic.gemma.rest.util.args.GeneArgServiceTest
    • ubic.gemma.core.ontology.providers.GeneOntologyService2Test (implements org.springframework.beans.factory.InitializingBean)
    • ubic.gemma.core.ontology.providers.GeneOntologyServiceTest (implements org.springframework.beans.factory.InitializingBean)
    • ubic.gemma.core.metrics.GenericMeterRegistryConfigurerTest
    • ubic.gemma.core.loader.genome.gene.ncbi.homology.HomologeneServiceTest
    • ubic.gemma.persistence.util.MailEngineTest
    • ubic.gemma.core.metrics.MeterRegistryCliConfigurerTest
    • ubic.gemma.core.ontology.OntologyLoadingTest
    • ubic.gemma.core.search.source.OntologySearchSourceTest
    • ubic.gemma.core.ontology.OntologyServiceTest
    • ubic.gemma.core.security.audit.PointcutsTest
    • ubic.gemma.persistence.service.expression.bioAssayData.RawAndProcessedExpressionDataVectorServiceTest
    • ubic.gemma.core.search.SearchServiceTest
    • ubic.gemma.core.search.SearchServiceVoConversionTest
    • ubic.gemma.persistence.util.SecurityUtilsTest
    • ubic.gemma.persistence.util.ServiceBasedValueObjectConverterTest
    • ubic.gemma.persistence.util.SettingsConfigTest
    • ubic.gemma.persistence.service.TableMaintenanceUtilTest
    • ubic.gemma.rest.util.args.TaxonArgServiceTest
  • org.springframework.test.context.support.AbstractTestExecutionListener (implements org.springframework.test.context.TestExecutionListener)
    • org.springframework.security.test.context.support.WithSecurityContextTestExecutionListener
  • ubic.gemma.core.security.authorization.acl.AclTestUtils
  • ubic.gemma.core.loader.expression.arrayDesign.AffyChipTypeExtractorTest
  • ubic.gemma.core.loader.expression.AffyPowerToolsProbesetSummarizeTest
  • ubic.gemma.core.analysis.preprocess.batcheffects.AffyScanDateExtractorTest
  • ubic.gemma.core.analysis.preprocess.batcheffects.AgilentScanDateExtractorTest
  • ubic.gemma.core.util.test.suite.AllTests
  • ubic.gemma.web.util.AnchorTagUtilTest
  • ubic.gemma.rest.AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
  • ubic.gemma.core.apps.ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration
  • junit.framework.Assert
    • junit.framework.TestCase (implements junit.framework.Test)
      • ubic.gemma.core.loader.util.fetcher.AbstractFetcherTest
      • ubic.gemma.core.loader.expression.arrayDesign.AffyProbeReaderTest
      • ubic.gemma.model.genome.biosequence.BioSequenceTest
      • ubic.gemma.core.loader.genome.BlatResultParserTest
      • ubic.gemma.model.genome.BlatResultTest
      • ubic.gemma.model.genome.gene.phenotype.valueObject.CharacteristicValueObjectTest
      • ubic.gemma.core.loader.expression.arrayDesign.CompositeSequenceParserTest
      • ubic.gemma.web.util.ConfigurationCookieTest
      • ubic.gemma.core.loader.entrez.pubmed.ESearchXMLParserTest
      • ubic.gemma.core.loader.genome.FastaParserTest
      • ubic.gemma.model.genome.GeneTest
      • ubic.gemma.core.loader.util.HttpFetcherTest
      • ubic.gemma.core.loader.expression.arrayDesign.IlluminaProbeReaderTest
      • ubic.gemma.core.datastructure.matrix.MatrixConversionTest
      • ubic.gemma.core.loader.genome.gene.ncbi.NCBIGeneParserTest
      • ubic.gemma.core.loader.genome.ProbeSequenceParserTest
      • ubic.gemma.core.loader.expression.geo.fetcher.RawDataFetcherTest
      • ubic.gemma.core.analysis.sequence.RepeatScanTest
      • ubic.gemma.core.analysis.sequence.SequenceBinUtilsTest
      • ubic.gemma.core.analysis.sequence.SequenceManipulationTest
      • ubic.gemma.core.loader.genome.gene.SwissProtParserTest
      • ubic.gemma.core.loader.genome.taxon.TaxonParserTest
  • org.assertj.core.api.Assertions (implements org.assertj.core.api.InstanceOfAssertFactories)
    • ubic.gemma.rest.util.Assertions
  • ubic.gemma.core.util.test.Assumptions
  • ubic.gemma.persistence.util.AsyncBeanAutowiringTest.MyService
  • ubic.gemma.persistence.util.AsyncBeanAutowiringTest.MyService2
  • ubic.gemma.persistence.util.AsyncFactoryTest.MyService
  • ubic.gemma.persistence.util.AsyncSingletonFactoryTest.MyService
  • ubic.gemma.model.common.auditAndSecurity.eventType.AuditEventTypeTest
  • ubic.gemma.core.util.test.BaseDatabaseTest.BaseDatabaseTestContextConfiguration
  • ubic.gemma.core.util.test.BaseDatabaseTest.DataSourceInitializer (implements org.springframework.beans.factory.InitializingBean)
  • ubic.gemma.core.datastructure.matrix.BaseExpressionDataMatrix<T> (implements ubic.gemma.core.datastructure.matrix.ExpressionDataMatrix<T>, java.io.Serializable)
    • ubic.gemma.core.datastructure.matrix.ExpressionDataDoubleMatrix
      • ubic.gemma.core.datastructure.matrix.ExpressionDataTestMatrix
  • ubic.gemma.core.analysis.expression.diff.BaselineSelectionTest
  • ubic.gemma.web.util.BaseWebTest.BaseWebTestContextConfiguration
  • ubic.gemma.core.analysis.preprocess.batcheffects.BatchInfoPopulationServiceTest
  • ubic.gemma.core.util.biomart.BioMartEnsemblNcbiFetcherTest
  • ubic.gemma.core.util.biomart.BioMartEnsemblNcbiObjectGeneratorTest
  • ubic.gemma.core.util.biomart.BioMartEnsemblNcbiParserTest
  • ubic.gemma.core.analysis.sequence.BlatAssociationScorerTest
  • ubic.gemma.core.ontology.CharacteristicSortTest
  • ubic.gemma.model.common.description.CharacteristicTest
  • ubic.gemma.model.common.description.CharacteristicUtilsTest
  • ubic.gemma.core.apps.CliTest
  • ubic.gemma.model.analysis.expression.coexpression.CoexpressionNodeDegreeValueObjectTest
  • ubic.gemma.core.analysis.preprocess.batcheffects.ComBatTest
  • ubic.gemma.core.util.CompletionGeneratorTest
  • ubic.gemma.core.loader.expression.geo.DatasetCombinerTest
  • ubic.gemma.core.datastructure.matrix.DetectFactorBaselineTest
  • ubic.gemma.core.ontology.providers.DiseaseOntologyTest
  • ubic.gemma.web.util.dwr.DwrBatchHandlers
  • ubic.gemma.web.util.dwr.DwrBatchMatchers
  • ubic.gemma.web.util.dwr.DwrException
  • ubic.gemma.web.util.dwr.DwrRequestBuilder (implements org.springframework.test.web.servlet.RequestBuilder)
  • ubic.gemma.web.remote.EntityDelegatorTest
  • ubic.gemma.persistence.util.EntityUtilsTest
  • ubic.gemma.core.loader.entrez.EutilFetchTest
  • ubic.gemma.core.datastructure.matrix.ExpressionDataDoubleMatrixUtilTest
  • ubic.gemma.core.analysis.preprocess.ExpressionDataSVDTest
  • ubic.gemma.core.loader.entrez.pubmed.ExpressionExperimentBibRefFinderTest
  • ubic.gemma.core.ontology.FactorValueOntologyUtilsTest
  • ubic.gemma.model.expression.experiment.FactorValueUtilsTest
  • ubic.gemma.core.util.test.suite.FastIntegrationTests
  • ubic.gemma.core.util.test.suite.FastTests
  • ubic.gemma.core.util.test.suite.FastUnitTests
  • ubic.gemma.web.util.upload.FileUploadUtilTest
  • ubic.gemma.rest.util.args.FilterArgTest
  • ubic.gemma.persistence.util.FilterQueryUtilsTest
  • ubic.gemma.persistence.util.FiltersTest
  • ubic.gemma.persistence.util.FilterTest
  • ubic.gemma.web.services.GemmaEndpointTest
  • ubic.gemma.core.ontology.providers.GemmaOntologyServiceTest
  • ubic.gemma.model.analysis.expression.coexpression.GeneCoexpressionTestedInTest
  • ubic.gemma.core.ontology.providers.GeneOntologyService2Test.GeneOntologyService2TestContextConfiguration
  • ubic.gemma.core.metrics.GenericMeterRegistryConfigurerTest.MyService
  • ubic.gemma.core.metrics.GenericMeterRegistryConfigurerTest.MyService2Impl (implements ubic.gemma.core.metrics.GenericMeterRegistryConfigurerTest.MyService2)
  • ubic.gemma.core.analysis.preprocess.batcheffects.GenericScanFileDateExtractorTest
  • ubic.gemma.model.genome.gene.GeneServiceImplTest
  • ubic.gemma.model.genome.gene.GeneValueObjectTest
  • ubic.gemma.core.loader.expression.geo.service.GeoBrowserServiceParseTest
  • ubic.gemma.core.loader.expression.geo.GeoBrowserTest
  • ubic.gemma.core.loader.expression.geo.GeoCharacteristicParseTest
  • ubic.gemma.core.loader.expression.geo.GeoFamilyParserTest
  • ubic.gemma.core.loader.expression.geo.GeoPlatformTest
  • ubic.gemma.core.loader.expression.geo.GeoTermReplacementTest
  • ubic.gemma.core.util.test.category.GeoTest
  • ubic.gemma.core.externalDb.GoldenPathQueryTest
  • ubic.gemma.core.util.test.category.GoldenPathTest
  • ubic.gemma.rest.analytics.ga4.GoogleAnalytics4ProviderTest
  • ubic.gemma.core.util.test.suite.IntegrationTests
  • org.glassfish.jersey.test.JerseyTest
    • ubic.gemma.rest.util.BaseJerseyTest (implements org.springframework.beans.factory.InitializingBean)
      • ubic.gemma.rest.util.BaseJerseyIntegrationTest
        • ubic.gemma.rest.AnalysisResultSetsJerseyTest
      • ubic.gemma.rest.DatasetsWebServiceTest
      • ubic.gemma.rest.OpenApiTest
      • ubic.gemma.rest.SearchWebServiceTest
    • ubic.gemma.rest.providers.WebApplicationExceptionMapperTest
  • ubic.gemma.persistence.util.ListUtilsTest
  • ubic.gemma.web.logging.LoggingIntegrationTest
  • ubic.gemma.core.search.lucene.LuceneQueryUtilsTest
  • ubic.gemma.core.search.LuceneTest
  • ubic.gemma.core.util.test.Maps
  • ubic.gemma.web.util.dwr.MockDwrBatchRequestBuilders
  • ubic.gemma.web.util.dwr.MockDwrRequestBuilders
  • ubic.gemma.web.util.dwr.MockDwrResultHandlers
  • ubic.gemma.web.util.dwr.MockDwrResultMatchers
  • ubic.gemma.web.util.MockLongJobControllerImpl (implements ubic.gemma.web.util.MockLongJobController)
  • ubic.gemma.core.loader.genome.gene.ncbi.NCBIGeneHistoryParserTest
  • ubic.gemma.core.ontology.OntologyCacheTest
  • ubic.gemma.core.ontology.providers.OntologyServiceFactoryTest
  • ubic.gemma.core.ontology.providers.PatoOntologyServiceTest
  • ubic.gemma.core.util.test.PersistentDummyObjectHelper
  • ubic.gemma.core.analysis.sequence.ProbeMapperTest
  • ubic.gemma.core.util.progress.ProgressAppenderTest
  • ubic.gemma.core.util.progress.ProgressDataTest
  • org.springframework.core.io.support.PropertiesLoaderSupport
    • org.springframework.beans.factory.config.PropertyResourceConfigurer (implements org.springframework.beans.factory.config.BeanFactoryPostProcessor, org.springframework.core.PriorityOrdered)
      • org.springframework.beans.factory.config.PlaceholderConfigurerSupport (implements org.springframework.beans.factory.BeanFactoryAware, org.springframework.beans.factory.BeanNameAware)
        • org.springframework.beans.factory.config.PropertyPlaceholderConfigurer
          • ubic.gemma.core.util.test.TestPropertyPlaceholderConfigurer
  • ubic.gemma.core.loader.entrez.pubmed.PubMedSearcherIntegrationTest
  • ubic.gemma.core.loader.entrez.pubmed.PubMedSearchTest
  • ubic.gemma.core.util.test.category.PubMedTest
  • ubic.gemma.core.loader.entrez.pubmed.PubMedXMLFetcherTest
  • ubic.gemma.core.loader.entrez.pubmed.PubMedXMLParserTest
  • ubic.gemma.core.analysis.preprocess.QuantileNormalizerTest
  • ubic.gemma.core.loader.expression.geo.QuantitationTypeParameterGuesserTest
  • ubic.gemma.persistence.util.QueryUtilsTest
  • ubic.gemma.persistence.service.expression.bioAssayData.RandomExpressionDataMatrixUtils
  • ubic.gemma.rest.servlet.RestapidocsIndexRewriteFilterTest
  • ubic.gemma.persistence.retry.RetryTest.TestRetryService
  • ubic.gemma.core.loader.expression.arrayExpress.SDRFFetcherTest
  • ubic.gemma.core.search.SearchResultSetTest
  • ubic.gemma.core.search.SearchResultTest
  • ubic.gemma.model.common.search.SearchSettingsTest
  • ubic.gemma.rest.SearchWebServiceTest.SearchWebServiceTestContextConfiguration
  • org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestBuilders
  • org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestBuilders.FormLoginRequestBuilder (implements org.springframework.test.web.servlet.RequestBuilder)
  • org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestBuilders.LogoutRequestBuilder (implements org.springframework.test.web.servlet.RequestBuilder)
  • org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors
  • org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.CsrfRequestPostProcessor (implements org.springframework.test.web.servlet.request.RequestPostProcessor)
  • org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.DigestRequestPostProcessor (implements org.springframework.test.web.servlet.request.RequestPostProcessor)
  • org.springframework.security.test.web.servlet.request.SecurityMockMvcRequestPostProcessors.UserRequestPostProcessor (implements org.springframework.test.web.servlet.request.RequestPostProcessor)
  • org.springframework.security.test.web.servlet.response.SecurityMockMvcResultMatchers
  • org.springframework.security.test.web.servlet.response.SecurityMockMvcResultMatchers.AuthenticatedMatcher
  • ubic.gemma.persistence.util.ServiceBasedValueObjectConverterTest.VoConverterTestContextConfiguration
  • ubic.gemma.rest.util.ServletUtilsTest
  • ubic.gemma.core.loader.genome.SimpleFastaCmdTest
  • ubic.gemma.web.logging.SlackAppenderTest
  • ubic.gemma.core.util.test.category.SlowTest
  • ubic.gemma.core.util.test.suite.SlowTests
  • ubic.gemma.rest.util.args.SortArgTest
  • ubic.gemma.rest.util.SortValueObjectTest
  • ubic.gemma.core.analysis.expression.coexpression.links.SpearmanMetricsTest
  • ubic.gemma.model.expression.experiment.StatementTest
  • ubic.gemma.core.util.StopWatchUtilsTest
  • ubic.gemma.core.util.StrictBeanDefinitionValidatorTest.TestAnnotatedVo (implements java.io.Serializable)
  • ubic.gemma.core.util.StrictBeanDefinitionValidatorTest.TestImplicitValueObject (implements java.io.Serializable)
  • ubic.gemma.rest.util.args.StringArrayArgTest
  • ubic.gemma.rest.util.args.StringArrayArgTest.Api
  • ubic.gemma.persistence.service.SubqueryUtilsTest
  • ubic.gemma.model.analysis.expression.coexpression.SupportDetailsTest
  • ubic.gemma.core.job.TaskUtilsTest
  • ubic.gemma.model.genome.TaxonValueObjectTest
  • ubic.gemma.core.util.test.TestAuthenticationUtilsImpl (implements org.springframework.beans.factory.InitializingBean, ubic.gemma.core.util.test.TestAuthenticationUtils)
  • org.springframework.security.test.context.TestSecurityContextHolder
  • ubic.gemma.core.loader.util.TestUtils
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • ubic.gemma.persistence.service.AbstractServiceTest.ExceptionWithMessage
      • ubic.gemma.persistence.service.AbstractServiceTest.ExceptionWithoutMessage
  • ubic.gemma.core.ontology.providers.UberonOntologyTest
  • ubic.gemma.core.util.test.suite.UnitTests
  • ubic.gemma.core.security.authentication.UserServiceImplTest
  • ubic.gemma.rest.providers.WebApplicationExceptionMapperTest.CustomResource
  • ubic.gemma.rest.providers.WebApplicationExceptionMapperTest.CustomResource.MyModel
  • org.springframework.security.test.web.support.WebTestUtils

Interface Hierarchy

• ubic.gemma.core.util.test.category.AllenBrainAtlasTest
• ubic.gemma.core.metrics.GenericMeterRegistryConfigurerTest.MyService2
• ubic.gemma.core.util.test.category.IntegrationTest
• ubic.gemma.web.util.MockLongJobController
• ubic.gemma.persistence.retry.RetryTest.TestRetryDao
• ubic.gemma.core.util.test.TestAuthenticationUtils
• org.springframework.security.test.context.support.WithSecurityContextFactory<A>

Annotation Type Hierarchy

• org.springframework.security.test.context.annotation.SecurityTestExecutionListeners (implements java.lang.annotation.Annotation)
• org.springframework.security.test.context.support.WithMockUser (implements java.lang.annotation.Annotation)
• org.springframework.security.test.context.support.WithSecurityContext (implements java.lang.annotation.Annotation)
• org.springframework.security.test.context.support.WithUserDetails (implements java.lang.annotation.Annotation)

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • ubic.gemma.persistence.service.AbstractFilteringVoEnabledDaoTest.FakeEnum