| AbstractGemmaEndpoint |
Abstracts out the security and a few constants.
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| ArrayDesignIdentifierByNameEndpoint |
array design short name -> return matching array design identifier
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| ArrayDesignUsedEndpoint |
Used for determining which array designs were used in a given expression experiment (EE)
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| DEDVfromEEIDGeneIDEndpoint |
Given a list Experiment IDs and a list gene IDs will return design element data vectors (DEDV), all the genes that
could have been responsible for that DEDV (only needs to contain 1 of the given genes) and the Expression Experiment
that the data came from.
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| DEDVRankEndpoint |
Given a collection of gene IDs, a collection of experiment IDs, and the method, the service will return a list of
genes mapped to a list of space delimited ranks.
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| DifferentialExpressionProbeResultEndpoint |
Allows access to the differential expression analysis.
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| ExperimentAnnotationEndpoint |
Expression Experiments in Gemma contain annotations.
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| ExperimentDEDVEndpoint |
Allows access to all the Design Element Data Vectors (DEDV's) for a given Expression Experiment.
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| ExperimentIDbyTaxonEndpoint |
Given a Taxon (eg.
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| ExperimentIdEndpoint |
Given the short name of an Expression Experiment, will return the matching Expression Experiment ID
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| ExperimentNameEndpoint |
Used for getting the Short Name given an Expression Experiment ID eg: 793 --> GSE10470
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| ExperimentNumSamplesEndpoint |
Used for determining the number of samples (biomaterials) associated with a given expression experiment
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| ExpressionExperimentSetIDsEndpoint |
A service to return the full list of Expression Experiment Set IDs along with the corresponding name and experiment
ids it contains.
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| Gene2GOdescriptionEndpoint |
Given a collection of Gene ID, will return a collection of Gene Ontology IDs (ie.
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| Gene2GoTermEndpoint |
Given a collection of Gene IDs, will return a collection of Gene Ontology URIs for each gene.
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| Gene2ProbeEndpoint |
for a given Official Gene Symbol and Taxon ID will return all the probes IDs and their array design IDs that assay
for that given gene.
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| GeneByNCBIIdEndpoint |
Given an NCBI ID, will return the matching Gemma gene id.
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| GeneCoexpressionEndpoint |
Allows access to the gene co-expression analysis.
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| GeneCoexpressionSearchEndpoint |
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| GeneDetailsByGeneIDEndpoint |
Given a collection of Gemma gene IDs, will return the matching NCBI Ids.
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| GeneIDbyTaxonEndpoint |
Given the Taxon (eg.
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| GeneIdEndpoint |
Given the official symbol and taxon of a gene, will return the matching gene ID.
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| GeneNameEndpoint |
Given a gene ID, will return the matching gene official symbol eg) 938103--> Grin1
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| GeneOverlapEndpoint |
given a query gene id & collection of target gene ids will determine the overlapping Go terms (intersection) between
each pair of Query Gene and Target Gene.
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| GoTerm2GeneEndpoint |
Given a Gene Ontology Term URI and a Taxon ID as input, will return a collection of gene IDs that match the GO Term
and Taxon.
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| Probe2GeneEndpoint |
Used for determining what genes a probe assays for.
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