Project Dependencies

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Type Licenses Optional
baseCode baseCode 1.1.21 jar The Apache Software License, Version 2.0 No
colt colt 1.2.0 jar - No
com.fasterxml.jackson.core jackson-annotations 2.15.3 jar The Apache Software License, Version 2.0 No
com.fasterxml.jackson.core jackson-core 2.15.3 jar The Apache Software License, Version 2.0 No
com.fasterxml.jackson.core jackson-databind 2.15.3 jar The Apache Software License, Version 2.0 No
com.google.code.findbugs jsr305 3.0.2 jar The Apache Software License, Version 2.0 No
com.mysql mysql-connector-j 8.0.33 jar The GNU General Public License, v2 with Universal FOSS Exception, v1.0 No
com.zaxxer HikariCP 4.0.3 jar The Apache Software License, Version 2.0 No
commons-fileupload commons-fileupload 1.5 jar Apache-2.0 No
commons-io commons-io 2.13.0 jar Apache-2.0 No
commons-logging commons-logging 1.3.0 jar Apache-2.0 No
commons-logging commons-logging-api 1.1 jar - No
gemma gemma-core 1.31.3-SNAPSHOT jar The Apache Software License, Version 2.0 No
io.micrometer micrometer-core 1.11.0 jar The Apache Software License, Version 2.0 No
io.micrometer micrometer-registry-jmx 1.11.0 jar The Apache Software License, Version 2.0 No
io.swagger.core.v3 swagger-annotations 2.2.11 jar Apache License 2.0 No
javax.resource javax.resource-api 1.7.1 jar CDDL + GPLv2 with classpath exception No
net.sf.ehcache ehcache-core 2.4.3 jar The Apache Software License, Version 2.0 No
org.apache.ant ant 1.10.13 jar The Apache Software License, Version 2.0 No
org.apache.commons commons-collections4 4.4 jar Apache License, Version 2.0 No
org.apache.commons commons-configuration2 2.8.0 jar Apache License, Version 2.0 No
org.apache.commons commons-lang3 3.12.0 jar Apache License, Version 2.0 No
org.apache.commons commons-text 1.10.0 jar Apache License, Version 2.0 No
org.apache.logging.log4j log4j-1.2-api 2.21.1 jar Apache-2.0 No
org.apache.logging.log4j log4j-core 2.21.1 jar Apache-2.0 No
org.apache.logging.log4j log4j-jcl 2.21.1 jar Apache-2.0 No
org.apache.logging.log4j log4j-jul 2.21.1 jar Apache-2.0 No
org.aspectj aspectjweaver 1.9.20.1 jar Eclipse Public License - v 2.0 No
org.hibernate hibernate-core 4.2.21.Final jar GNU Lesser General Public License No
org.hibernate hibernate-ehcache 4.2.21.Final jar GNU Lesser General Public License No
org.jfree jfreechart 1.5.4 jar GNU Lesser General Public Licence No
org.projectlombok lombok 1.18.30 jar The MIT License No
org.springframework spring-beans 3.2.18.RELEASE jar The Apache Software License, Version 2.0 No
org.springframework spring-context 3.2.18.RELEASE jar The Apache Software License, Version 2.0 No
org.springframework spring-context-support 3.2.18.RELEASE jar The Apache Software License, Version 2.0 No
org.springframework spring-core 3.2.18.RELEASE jar The Apache Software License, Version 2.0 No
org.springframework spring-jdbc 3.2.18.RELEASE jar The Apache Software License, Version 2.0 No
org.springframework spring-orm 3.2.18.RELEASE jar The Apache Software License, Version 2.0 No
org.springframework spring-tx 3.2.18.RELEASE jar The Apache Software License, Version 2.0 No
org.springframework.security spring-security-acl 3.2.10.RELEASE jar The Apache Software License, Version 2.0 No
org.springframework.security spring-security-core 3.2.10.RELEASE jar The Apache Software License, Version 2.0 No
pavlab gemma-gsec 0.0.16 jar The Apache Software License, Version 2.0 No
xerces xercesImpl 2.12.2 jar The Apache Software License, Version 2.0 No
xml-apis xml-apis 1.4.01 jar The Apache Software License, Version 2.0The SAX LicenseThe W3C License No
org.apache.groovy groovy-all 4.0.9 pom The Apache Software License, Version 2.0 Yes

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

GroupId ArtifactId Version Type Licenses
org.apache.logging.log4j log4j-slf4j-impl 2.21.1 jar Apache-2.0
org.dom4j dom4j 2.1.4 jar Plexus
org.springframework spring-aop 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-aspects 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework spring-expression 3.2.18.RELEASE jar The Apache Software License, Version 2.0
org.springframework.security spring-security-config 3.2.10.RELEASE jar The Apache Software License, Version 2.0

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Classifier Type Licenses
com.h2database h2 2.2.220 - jar MPL 2.0EPL 1.0
gemma gemma-core 1.31.3-SNAPSHOT tests test-jar The Apache Software License, Version 2.0
io.takari.junit takari-cpsuite 1.2.7 - jar The Eclipse Public License, Version 1.0
junit junit 4.13.2 - jar Eclipse Public License 1.0
org.assertj assertj-core 3.25.2 - jar Apache License, Version 2.0
org.mockito mockito-core 4.11.0 - jar The MIT License
org.mockito mockito-inline 4.11.0 - jar The MIT License
org.springframework spring-test 3.2.18.RELEASE - jar The Apache Software License, Version 2.0

Project Transitive Dependencies

The following is a list of transitive dependencies for this project. Transitive dependencies are the dependencies of the project dependencies.

compile

The following is a list of compile dependencies for this project. These dependencies are required to compile and run the application:

GroupId ArtifactId Version Classifier Type Licenses Optional
RoSuDA JRIEngine 0.5-0 - jar - No
antlr antlr 2.7.7 - jar BSD License No
aopalliance aopalliance 1.0 - jar Public Domain No
com.github.fommil jniloader 1.1 - jar LGPL No
com.github.fommil.netlib all 1.1.2 - pom BSD 3 Clause No
com.github.fommil.netlib core 1.1.2 - jar BSD 3 Clause No
com.github.fommil.netlib native_ref-java 1.1 - jar BSD 3 Clause No
com.github.fommil.netlib native_system-java 1.1 - jar BSD 3 Clause No
com.github.fommil.netlib netlib-native_ref-linux-armhf 1.1 natives jar BSD 3 Clause No
com.github.fommil.netlib netlib-native_ref-linux-i686 1.1 natives jar BSD 3 Clause No
com.github.fommil.netlib netlib-native_ref-linux-x86_64 1.1 natives jar BSD 3 Clause No
com.github.fommil.netlib netlib-native_ref-osx-x86_64 1.1 natives jar BSD 3 Clause No
com.github.fommil.netlib netlib-native_ref-win-i686 1.1 natives jar BSD 3 Clause No
com.github.fommil.netlib netlib-native_ref-win-x86_64 1.1 natives jar BSD 3 Clause No
com.github.fommil.netlib netlib-native_system-linux-armhf 1.1 natives jar BSD 3 Clause No
com.github.fommil.netlib netlib-native_system-linux-i686 1.1 natives jar BSD 3 Clause No
com.github.fommil.netlib netlib-native_system-linux-x86_64 1.1 natives jar BSD 3 Clause No
com.github.fommil.netlib netlib-native_system-osx-x86_64 1.1 natives jar BSD 3 Clause No
com.github.fommil.netlib netlib-native_system-win-i686 1.1 natives jar BSD 3 Clause No
com.github.fommil.netlib netlib-native_system-win-x86_64 1.1 natives jar BSD 3 Clause No
com.google.protobuf protobuf-java 3.21.9 - jar BSD-3-Clause No
com.googlecode.javaewah JavaEWAH 0.7.9 - jar Apache 2 No
com.googlecode.matrix-toolkits-java mtj 1.0.4 - jar GNU Lesser General Public License No
com.opencsv opencsv 5.9 - jar Apache 2 No
com.zaxxer SparseBitSet 1.3 - jar The Apache Software License, Version 2.0 No
commons-codec commons-codec 1.16.0 - jar Apache-2.0 No
commons-lang commons-lang 2.6 - jar The Apache Software License, Version 2.0 No
commons-net commons-net 3.9.0 - jar Apache License, Version 2.0 No
concurrent concurrent 1.3.4 - jar Public domain, Sun Microsoystems No
io.dropwizard.metrics metrics-core 4.2.18 - jar Apache License 2.0 No
io.dropwizard.metrics metrics-jmx 4.2.18 - jar Apache License 2.0 No
io.micrometer micrometer-commons 1.11.0 - jar The Apache Software License, Version 2.0 No
io.micrometer micrometer-observation 1.11.0 - jar The Apache Software License, Version 2.0 No
javax.activation javax.activation-api 1.2.0 - jar CDDL/GPLv2+CE No
javax.transaction javax.transaction-api 1.3 - jar CDDL + GPLv2 with classpath exception No
javax.xml.bind jaxb-api 2.3.1 - jar CDDL 1.1GPL2 w/ CPE No
jboss jboss-ejb3x 4.2.2.GA - jar - No
net.sourceforge.f2j arpack_combined_all 0.1 - jar The BSD License No
obo org.geneontology 1.002 - jar - No
org.apache.ant ant-launcher 1.10.13 - jar The Apache Software License, Version 2.0 No
org.apache.commons commons-csv 1.10.0 - jar Apache-2.0 No
org.apache.commons commons-math3 3.6.1 - jar Apache License, Version 2.0 No
org.apache.httpcomponents httpclient 4.5.14 - jar Apache License, Version 2.0 No
org.apache.httpcomponents httpcore 4.4.16 - jar Apache License, Version 2.0 No
org.apache.jena jena-arq 2.9.4 - jar The Apache Software License, Version 2.0 No
org.apache.jena jena-core 2.7.4 - jar The Apache Software License, Version 2.0 No
org.apache.jena jena-iri 0.9.4 - jar The Apache Software License, Version 2.0 No
org.apache.jena jena-larq 1.0.0-incubating - jar The Apache Software License, Version 2.0 No
org.apache.logging.log4j log4j-api 2.21.1 - jar Apache-2.0 No
org.apache.lucene lucene-analyzers 3.6.2 - jar Apache 2 No
org.apache.lucene lucene-core 3.6.2 - jar Apache 2 No
org.apache.lucene lucene-facet 3.6.2 - jar Apache 2 No
org.apache.lucene lucene-grouping 3.6.2 - jar Apache 2 No
org.apache.lucene lucene-highlighter 3.6.2 - jar Apache 2 No
org.apache.lucene lucene-kuromoji 3.6.2 - jar Apache 2 No
org.apache.lucene lucene-memory 3.6.2 - jar Apache 2 No
org.apache.lucene lucene-misc 3.6.2 - jar Apache 2 No
org.apache.lucene lucene-phonetic 3.6.2 - jar Apache 2 No
org.apache.lucene lucene-smartcn 3.6.2 - jar Apache 2 No
org.apache.lucene lucene-spatial 3.6.2 - jar Apache 2 No
org.apache.lucene lucene-spellchecker 3.6.2 - jar Apache 2 No
org.apache.lucene lucene-stempel 3.6.2 - jar Apache 2 No
org.apache.poi poi 5.2.5 - jar Apache License, Version 2.0 No
org.apache.solr solr-analysis-extras 3.6.2 - jar Apache 2 No
org.apache.solr solr-core 3.6.2 - jar Apache 2 No
org.apache.solr solr-solrj 3.6.2 - jar Apache 2 No
org.apache.velocity velocity-engine-core 2.3 - jar Apache License, Version 2.0 No
org.hibernate hibernate-search-analyzers 4.4.6.Final - jar GNU Lesser General Public License No
org.hibernate hibernate-search-engine 4.4.6.Final - jar GNU Lesser General Public License No
org.hibernate hibernate-search-orm 4.4.6.Final - jar GNU Lesser General Public License No
org.hibernate.common hibernate-commons-annotations 4.0.2.Final - jar GNU LESSER GENERAL PUBLIC LICENSE No
org.hibernate.javax.persistence hibernate-jpa-2.0-api 1.0.1.Final - jar null No
org.jboss.logging jboss-logging 3.1.0.GA - jar GNU Lesser General Public License, version 2.1 No
org.jboss.spec.javax.transaction jboss-transaction-api_1.1_spec 1.0.1.Final - jar Common Development and Distribution LicenseGNU General Public License, Version 2 with the Classpath Exception No
org.rosuda.REngine REngine 2.1.0 - jar LGPL v2.1 No
org.slf4j jcl-over-slf4j 1.7.36 - jar Apache License, Version 2.0 No
org.slf4j slf4j-api 1.7.36 - jar MIT License No
org.springframework.retry spring-retry 1.0.3.RELEASE - jar Apache 2.0 No
com.fasterxml.jackson.dataformat jackson-dataformat-yaml 2.14.2 - jar The Apache Software License, Version 2.0 Yes
com.github.javaparser javaparser-core 3.25.0 - jar GNU Lesser General Public LicenseApache License, Version 2.0 Yes
com.thoughtworks.qdox qdox 1.12.1 - jar The Apache Software License, Version 2.0 Yes
info.picocli picocli 4.7.0 - jar The Apache Software License, version 2.0 Yes
jline jline 2.14.6 - jar The BSD License Yes
org.abego.treelayout org.abego.treelayout.core 1.0.3 - jar BSD 3-Clause "New" or "Revised" License (BSD-3-Clause) Yes
org.apache.ant ant-antlr 1.10.13 - jar The Apache Software License, Version 2.0 Yes
org.apache.ant ant-junit 1.10.13 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-ant 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-cli-picocli 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-console 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-datetime 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-docgenerator 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-groovydoc 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-groovysh 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-jmx 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-json 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-jsr223 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-macro 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-nio 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-servlet 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-sql 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-swing 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-templates 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-test 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-test-junit5 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-xml 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.groovy groovy-yaml 4.0.9 - jar The Apache Software License, Version 2.0 Yes
org.apache.ivy ivy 2.5.1 - jar The Apache Software License, Version 2.0 Yes
org.junit.jupiter junit-jupiter-api 5.9.2 - jar Eclipse Public License v2.0 Yes
org.junit.jupiter junit-jupiter-engine 5.9.2 - jar Eclipse Public License v2.0 Yes
org.junit.platform junit-platform-commons 1.9.2 - jar Eclipse Public License v2.0 Yes
org.junit.platform junit-platform-engine 1.9.2 - jar Eclipse Public License v2.0 Yes
org.junit.platform junit-platform-launcher 1.9.2 - jar Eclipse Public License v2.0 Yes
org.opentest4j opentest4j 1.2.0 - jar The Apache License, Version 2.0 Yes
org.ow2.asm asm 9.4 - jar BSD-3-Clause Yes
org.ow2.asm asm-analysis 9.4 - jar BSD-3-Clause Yes
org.ow2.asm asm-tree 9.4 - jar BSD-3-Clause Yes
org.ow2.asm asm-util 9.4 - jar BSD-3-Clause Yes
org.yaml snakeyaml 1.33 - jar Apache License, Version 2.0 Yes

runtime

The following is a list of runtime dependencies for this project. These dependencies are required to run the application:

GroupId ArtifactId Version Type Licenses
RoSuDA JRI 0.5-0 jar -
com.sun.mail javax.mail 1.6.2 jar CDDL/GPLv2+CE
javax.activation activation 1.1 jar Common Development and Distribution License (CDDL) v1.0
org.hdrhistogram HdrHistogram 2.1.12 jar Public Domain, per Creative Commons CC0BSD-2-Clause
org.javassist javassist 3.30.2-GA jar MPL 1.1LGPL 2.1Apache License 2.0
org.latencyutils LatencyUtils 2.0.3 jar Public Domain, per Creative Commons CC0

test

The following is a list of test dependencies for this project. These dependencies are only required to compile and run unit tests for the application:

GroupId ArtifactId Version Type Licenses
net.bytebuddy byte-buddy 1.12.19 jar Apache License, Version 2.0
net.bytebuddy byte-buddy-agent 1.12.19 jar Apache License, Version 2.0
org.hamcrest hamcrest-core 1.3 jar New BSD License
org.objenesis objenesis 3.3 jar Apache License, Version 2.0

Project Dependency Graph

Dependency Tree

Licenses

Unnamed: JPA 2.0 API

GNU LESSER GENERAL PUBLIC LICENSE: Hibernate Commons Annotations

Apache 2.0: Spring Retry

The BSD License: Fortran to Java ARPACK, JLine

The Apache License, Version 2.0: org.opentest4j:opentest4j

Eclipse Public License 1.0: JUnit

The Eclipse Public License, Version 1.0: takari-cpsuite

MIT License: SLF4J API Module

Eclipse Public License v2.0: JUnit Jupiter API, JUnit Jupiter Engine, JUnit Platform Commons, JUnit Platform Engine API, JUnit Platform Launcher

Plexus: dom4j

GPL2 w/ CPE: jaxb-api

The GNU General Public License, v2 with Universal FOSS Exception, v1.0: MySQL Connector/J

New BSD License: Hamcrest Core

CDDL/GPLv2+CE: JavaBeans Activation Framework API jar, JavaMail API

Apache 2: Apache Solr Analysis Extras, Apache Solr Core, Apache Solr Solrj, JavaEWAH, Lucene Common Analyzers, Lucene Core, Lucene Facets, Lucene Grouping, Lucene Highlighter, Lucene Kuromoji Japanese Morphological Analyzer, Lucene Memory, Lucene Miscellaneous, Lucene Phonetic Analyzer, Lucene Smart Chinese Analyzer, Lucene Spatial, Lucene Spellchecker, Lucene Stempel Analyzer, opencsv

Public domain, Sun Microsoystems: Dough Lea's util.concurrent package

BSD 3 Clause: all, core, native_ref-java, native_system-java, netlib-native_ref-linux-armhf, netlib-native_ref-linux-i686, netlib-native_ref-linux-x86_64, netlib-native_ref-osx-x86_64, netlib-native_ref-win-i686, netlib-native_ref-win-x86_64, netlib-native_system-linux-armhf, netlib-native_system-linux-i686, netlib-native_system-linux-x86_64, netlib-native_system-osx-x86_64, netlib-native_system-win-i686, netlib-native_system-win-x86_64

Unknown: JRI, JRIEngine, colt, jboss-ejb3x

LGPL: JniLoader

Public Domain, per Creative Commons CC0: HdrHistogram, LatencyUtils

BSD License: AntLR Parser Generator

Apache License 2.0: Javassist, Metrics Core, Metrics Integration with JMX, swagger-annotations

The MIT License: Project Lombok, mockito-core, mockito-inline

Common Development and Distribution License (CDDL) v1.0: JavaBeans Activation Framework (JAF)

Apache License, Version 2.0: Apache Commons Collections, Apache Commons Configuration, Apache Commons Lang, Apache Commons Math, Apache Commons Net, Apache Commons Text, Apache HttpClient, Apache HttpCore, Apache POI - Common, Apache Velocity - Engine, AssertJ Core, Byte Buddy (without dependencies), Byte Buddy agent, JCL 1.2 implemented over SLF4J, Objenesis, SnakeYAML, javaparser-core

Apache-2.0: Apache Commons CSV, Apache Commons Codec, Apache Commons FileUpload, Apache Commons IO, Apache Commons Logging, Apache Log4j 1.x Compatibility API, Apache Log4j API, Apache Log4j Commons Logging Bridge, Apache Log4j Core, Apache Log4j JUL Adapter, Apache Log4j SLF4J Binding

GNU General Public License, Version 2 with the Classpath Exception: Java Transaction API

EPL 1.0: H2 Database Engine

MPL 1.1: Javassist

MPL 2.0: H2 Database Engine

CDDL 1.1: jaxb-api

The SAX License: XML Commons External Components XML APIs

The Apache Software License, version 2.0: picocli

Common Development and Distribution License: Java Transaction API

BSD-3-Clause: Protocol Buffers [Core], asm, asm-analysis, asm-tree, asm-util

BSD-2-Clause: HdrHistogram

LGPL v2.1: REngine Java interface to R

The W3C License: XML Commons External Components XML APIs

Public Domain: AOP alliance

GNU Lesser General Public License: A Hibernate O/RM Module, Hibernate Search Analyzer Framework, Hibernate Search Engine, Hibernate Search ORM, Matrix Toolkits for Java, javaparser-core

GNU Lesser General Public License, version 2.1: JBoss Logging 3

BSD 3-Clause "New" or "Revised" License (BSD-3-Clause): abego TreeLayout Core

LGPL 2.1: Javassist

CDDL + GPLv2 with classpath exception: javax.resource API, javax.transaction API

Eclipse Public License - v 2.0: AspectJ Weaver

GNU Lesser General Public Licence: JFreeChart

The Apache Software License, Version 2.0: Apache Ant + ANTLR, Apache Ant + JUnit, Apache Ant Core, Apache Ant Launcher, Apache Groovy, Apache Ivy, Commons Lang, Ehcache Core, FindBugs-jsr305, Gemma Core, Gemma Groovy Support, HikariCP, Jackson-annotations, Jackson-core, Jackson-dataformat-YAML, LARQ, QDox, SparseBitSet, Spring AOP, Spring Aspects, Spring Beans, Spring Context, Spring Context Support, Spring Core, Spring Expression Language (SpEL), Spring JDBC, Spring Object/Relational Mapping, Spring TestContext Framework, Spring Transaction, XML Commons External Components XML APIs, Xerces2-j, baseCode, gsec, jackson-databind, jena-arq, jena-core, jena-iri, micrometer-commons, micrometer-core, micrometer-observation, micrometer-registry-jmx, spring-security-acl, spring-security-config, spring-security-core

Dependency File Details

Filename Size Entries Classes Packages Java Version Debug Information Sealed
JRI-0.5-0.jar 71.8 kB 15 9 1 1.4 Yes No
JRIEngine-0.5-0.jar 9.7 kB 5 2 1 1.4 Yes No
antlr-2.7.7.jar 445.3 kB 239 224 12 1.2 Yes No
aopalliance-1.0.jar 4.5 kB 15 9 2 1.3 Yes No
baseCode-1.1.21.jar 2.2 MB 296 255 26 1.8 Yes No
colt-1.2.0.jar 581.9 kB 623 593 24 1.2 No No
jackson-annotations-2.15.3.jar 75.6 kB 86 73 2 - Yes No
jackson-core-2.15.3.jar 549.2 kB 250 186 15 - Yes No
jackson-databind-2.15.3.jar 1.6 MB 816 777 24 - Yes No
jniloader-1.1.jar 8.7 kB 13 2 1 1.6 Yes No
all-1.1.2.pom 4.3 kB - - - - - -
core-1.1.2.jar 164.4 kB 17 6 1 1.6 Yes No
native_ref-java-1.1.jar 54.5 kB 14 3 1 1.6 Yes No
native_system-java-1.1.jar 54.5 kB 14 3 1 1.6 Yes No
netlib-native_ref-linux-armhf-1.1-natives.jar 1.2 MB 8 0 0 - No No
netlib-native_ref-linux-i686-1.1-natives.jar 1.5 MB 8 0 0 - No No
netlib-native_ref-linux-x86_64-1.1-natives.jar 1.7 MB 8 0 0 - No No
netlib-native_ref-osx-x86_64-1.1-natives.jar 1.8 MB 11 0 0 - No No
netlib-native_ref-win-i686-1.1-natives.jar 1.8 MB 11 0 0 - No No
netlib-native_ref-win-x86_64-1.1-natives.jar 2.3 MB 11 0 0 - No No
netlib-native_system-linux-armhf-1.1-natives.jar 310.9 kB 11 0 0 - No No
netlib-native_system-linux-i686-1.1-natives.jar 435.4 kB 11 0 0 - No No
netlib-native_system-linux-x86_64-1.1-natives.jar 458.6 kB 11 0 0 - No No
netlib-native_system-osx-x86_64-1.1-natives.jar 554 kB 11 0 0 - No No
netlib-native_system-win-i686-1.1-natives.jar 561.5 kB 11 0 0 - No No
netlib-native_system-win-x86_64-1.1-natives.jar 637.4 kB 11 0 0 - No No
jsr305-3.0.2.jar 19.9 kB 46 35 3 1.5 Yes No
protobuf-java-3.21.9.jar 1.7 MB 705 679 2 1.7 Yes No
JavaEWAH-0.7.9.jar 125.1 kB 81 69 3 1.6 Yes No
mtj-1.0.4.jar 269 kB 196 183 3 1.6 Yes No
h2-2.2.220.jar 2.6 MB 1054 1047 58 - Yes No
mysql-connector-j-8.0.33.jar 2.5 MB 1117 1065 29 1.8 Yes No
opencsv-5.9.jar 240.4 kB 195 156 15 1.8 Yes No
javax.mail-1.6.2.jar 659 kB 375 340 14 1.7 Yes No
HikariCP-4.0.3.jar 159.2 kB 95 76 9 - Yes No
SparseBitSet-1.3.jar 25.8 kB 25 15 1 1.6 Yes No
commons-codec-1.16.0.jar 360.7 kB 256 109 7 1.8 Yes No
commons-fileupload-1.5.jar 74.1 kB 74 56 6 1.6 Yes No
commons-io-2.13.0.jar 484 kB 355 329 14 1.8 Yes No
commons-lang-2.6.jar 284.2 kB 155 133 10 1.3 Yes No
commons-logging-1.3.0.jar 70.8 kB 44 28 3 - Yes No
commons-logging-api-1.1.jar 44.6 kB 29 20 2 1.1 Yes No
commons-net-3.9.0.jar 316.4 kB 229 197 20 1.8 Yes No
concurrent-1.3.4.jar 189.3 kB 230 221 2 1.1 No No
gemma-core-1.31.3-SNAPSHOT.jar 3.2 MB 1734 1403 146 1.8 Yes No
test-classes 0 kB - - - - - -
metrics-core-4.2.18.jar 126.4 kB 114 104 1 1.8 Yes No
metrics-jmx-4.2.18.jar 21.2 kB 30 19 1 1.8 Yes No
micrometer-commons-1.11.0.jar 47.1 kB 50 36 6 1.8 Yes No
micrometer-core-1.11.0.jar 865.8 kB 600 530 45 - Yes No
micrometer-observation-1.11.0.jar 68 kB 70 55 6 1.8 Yes No
micrometer-registry-jmx-1.11.0.jar 9.2 kB 11 3 1 1.8 Yes No
swagger-annotations-2.2.11.jar 42.1 kB 76 50 13 1.8 Yes No
takari-cpsuite-1.2.7.jar 22.5 kB 32 20 1 1.7 Yes No
activation-1.1.jar 63 kB 50 38 3 1.4 Yes No
javax.activation-api-1.2.0.jar 56.7 kB 41 31 1 1.5 Yes No
javax.resource-api-1.7.1.jar 69.9 kB 111 89 6 1.7 Yes No
javax.transaction-api-1.3.jar 28 kB 30 19 1 1.7 Yes No
jaxb-api-2.3.1.jar 128.1 kB 136 111 7 - Yes No
jboss-ejb3x-4.2.2.GA.jar 20.4 kB 48 41 4 1.5 Yes No
junit-4.13.2.jar 384.6 kB 389 350 32 1.5 Yes No
byte-buddy-1.12.19.jar 4 MB 2742 2688 39 - Yes No
byte-buddy-agent-1.12.19.jar 256.4 kB 90 70 3 - Yes No
ehcache-core-2.4.3.jar 1 MB 801 732 57 1.5 Yes No
arpack_combined_all-0.1.jar 1.2 MB 926 915 6 1.4 Yes No
org.geneontology-1.002.jar 307.3 kB 276 256 14 1.4 Yes Yes
ant-1.10.13.jar 2.3 MB 1257 1173 62 1.8 Yes No
ant-launcher-1.10.13.jar 20.6 kB 15 5 2 1.8 Yes No
commons-collections4-4.4.jar 751.9 kB 555 524 19 1.8 Yes No
commons-configuration2-2.8.0.jar 632.5 kB 417 385 18 1.8 Yes No
commons-csv-1.10.0.jar 54.7 kB 32 19 1 1.8 Yes No
commons-lang3-3.12.0.jar 587.4 kB 374 345 17 1.8 Yes No
commons-math3-3.6.1.jar 2.2 MB 1402 1301 75 1.5 Yes No
commons-text-1.10.0.jar 238.4 kB 174 154 8 1.8 Yes No
httpclient-4.5.14.jar 785.6 kB 511 470 24 1.6 Yes No
httpcore-4.4.16.jar 327.9 kB 283 253 17 1.6 Yes No
jena-arq-2.9.4.jar 2.4 MB 1846 1748 81 1.6 Yes No
jena-core-2.7.4.jar 1.7 MB 1389 1300 43 1.6 Yes No
jena-iri-0.9.4.jar 136.4 kB 75 60 2 1.6 Yes No
jena-larq-1.0.0-incubating.jar 44.6 kB 43 25 5 1.6 Yes No
log4j-1.2-api-2.21.1.jar 351.9 kB 253 209 22 - Yes No
log4j-api-2.21.1.jar 317.5 kB 224 190 9 - Yes No
log4j-core-2.21.1.jar 1.9 MB 1325 1221 55 - Yes No
log4j-jcl-2.21.1.jar 13.1 kB 22 5 2 - Yes No
log4j-jul-2.21.1.jar 30.9 kB 31 16 2 - Yes No
log4j-slf4j-impl-2.21.1.jar 24.5 kB 29 13 3 - Yes No
lucene-analyzers-3.6.2.jar 1.2 MB 396 302 52 1.5 Yes No
lucene-core-3.6.2.jar 1.5 MB 997 973 18 1.5 Yes No
lucene-facet-3.6.2.jar 295.7 kB 264 231 26 1.5 Yes No
lucene-grouping-3.6.2.jar 64 kB 44 35 1 1.5 Yes No
lucene-highlighter-3.6.2.jar 89.2 kB 64 54 2 1.5 Yes No
lucene-kuromoji-3.6.2.jar 4.5 MB 65 42 4 1.5 Yes No
lucene-memory-3.6.2.jar 29.8 kB 19 10 1 1.5 Yes No
lucene-misc-3.6.2.jar 65.8 kB 45 35 3 1.5 Yes No
lucene-phonetic-3.6.2.jar 15.2 kB 12 3 1 1.5 Yes No
lucene-smartcn-3.6.2.jar 3.6 MB 35 21 2 1.5 Yes No
lucene-spatial-3.6.2.jar 60.4 kB 47 34 6 1.5 Yes No
lucene-spellchecker-3.6.2.jar 104.8 kB 74 61 5 1.5 Yes No
lucene-stempel-3.6.2.jar 512 kB 33 19 3 1.5 Yes No
poi-5.2.5.jar 3 MB 1764 1681 64 - Yes No
solr-analysis-extras-3.6.2.jar 36.5 kB 16 8 1 1.5 Yes No
solr-core-3.6.2.jar 1.6 MB 1055 1009 36 1.5 Yes No
solr-solrj-3.6.2.jar 316.4 kB 211 192 11 1.5 Yes No
velocity-engine-core-2.3.jar 531.3 kB 299 256 19 1.8 Yes No
aspectjweaver-1.9.20.1.jar 2.1 MB 1025 972 36 1.8 Yes No
assertj-core-3.25.2.jar 1.4 MB 872 830 28 - Yes No
dom4j-2.1.4.jar 324.7 kB 201 184 14 1.8 Yes No
hamcrest-core-1.3.jar 45 kB 52 45 3 1.5 Yes No
HdrHistogram-2.1.12.jar 173.8 kB 106 96 2 1.7 Yes No
hibernate-core-4.2.21.Final.jar 4.7 MB 3234 3024 171 1.6 Yes No
hibernate-ehcache-4.2.21.Final.jar 138.4 kB 71 58 6 1.6 Yes No
hibernate-search-analyzers-4.4.6.Final.jar 2.4 kB 7 0 0 - No No
hibernate-search-engine-4.4.6.Final.jar 939.2 kB 826 696 71 1.6 Yes No
hibernate-search-orm-4.4.6.Final.jar 127.2 kB 105 69 15 1.6 Yes No
hibernate-commons-annotations-4.0.2.Final.jar 81.8 kB 82 64 7 1.6 Yes No
hibernate-jpa-2.0-api-1.0.1.Final.jar 102.7 kB 190 176 4 1.5 Yes No
javassist-3.30.2-GA.jar 794.7 kB 450 426 17 1.8 Yes No
jboss-logging-3.1.0.GA.jar 60.8 kB 55 43 1 1.6 Yes No
jboss-transaction-api_1.1_spec-1.0.1.Final.jar 25.2 kB 31 18 2 1.6 Yes No
jfreechart-1.5.4.jar 1.6 MB 784 689 41 1.8 Yes No
LatencyUtils-2.0.3.jar 29.8 kB 31 22 1 1.6 Yes No
mockito-core-4.11.0.jar 684.9 kB 651 579 64 1.8 Yes No
mockito-inline-4.11.0.jar 1.5 kB 6 0 0 - No No
objenesis-3.3.jar 49.4 kB 59 43 10 1.8 Yes No
lombok-1.18.30.jar 2 MB 1063 172 13 - Yes No
REngine-2.1.0.jar 39 kB 43 33 1 1.4 Yes No
jcl-over-slf4j-1.7.36.jar 16.6 kB 23 9 2 1.5 Yes No
slf4j-api-1.7.36.jar 41.1 kB 46 34 4 1.5 Yes No
spring-aop-3.2.18.RELEASE.jar 339.1 kB 282 252 15 1.5 Yes No
spring-aspects-3.2.18.RELEASE.jar 51.4 kB 55 30 7 1.5 Yes No
spring-beans-3.2.18.RELEASE.jar 614.4 kB 401 358 14 1.5 Yes No
spring-context-3.2.18.RELEASE.jar 868.2 kB 737 633 67 1.5 Yes No
spring-context-support-3.2.18.RELEASE.jar 128.8 kB 97 76 10 1.5 Yes No
spring-core-3.2.18.RELEASE.jar 885.6 kB 686 648 32 1.5 Yes No
spring-expression-3.2.18.RELEASE.jar 196.3 kB 140 128 6 1.5 Yes No
spring-jdbc-3.2.18.RELEASE.jar 406.1 kB 328 296 18 1.5 Yes No
spring-orm-3.2.18.RELEASE.jar 385 kB 296 276 14 1.5 Yes No
spring-test-3.2.18.RELEASE.jar 458.3 kB 369 335 27 1.5 Yes No
spring-tx-3.2.18.RELEASE.jar 242.6 kB 233 197 20 1.5 Yes No
spring-retry-1.0.3.RELEASE.jar 80.9 kB 100 81 10 1.5 Yes No
spring-security-acl-3.2.10.RELEASE.jar 82.8 kB 78 62 5 1.5 Yes No
spring-security-config-3.2.10.RELEASE.jar 404.8 kB 199 156 22 1.5 Yes No
spring-security-core-3.2.10.RELEASE.jar 369.6 kB 370 306 43 1.5 Yes No
gemma-gsec-0.0.16.jar 110.4 kB 89 65 8 1.8 Yes No
xercesImpl-2.12.2.jar 1.4 MB 1045 962 40 1.7 No No
xml-apis-1.4.01.jar 220.5 kB 391 346 29 1.1 No No
jackson-dataformat-yaml-2.14.2.jar 54.4 kB 43 21 4 - Yes No
javaparser-core-3.25.0.jar 1.4 MB 701 657 35 1.8 Yes No
qdox-1.12.1.jar 179.8 kB 124 104 11 1.4 Yes No
picocli-4.7.0.jar 412.8 kB 232 227 2 - Yes No
jline-2.14.6.jar 268.8 kB 136 105 9 1.5 Yes No
org.abego.treelayout.core-1.0.3.jar 26.8 kB 36 19 6 1.5 Yes No
ant-antlr-1.10.13.jar 12.3 kB 12 1 1 1.8 Yes No
ant-junit-1.10.13.jar 141.2 kB 65 48 1 1.8 Yes No
groovy-4.0.9.jar 7.6 MB 4736 4577 120 1.8 Yes No
groovy-all-4.0.9.pom 26.1 kB - - - - - -
groovy-ant-4.0.9.jar 71.3 kB 35 23 2 1.8 Yes No
groovy-cli-picocli-4.0.9.jar 51.9 kB 30 23 1 1.8 Yes No
groovy-console-4.0.9.jar 793.9 kB 486 440 4 1.8 Yes No
groovy-datetime-4.0.9.jar 15.6 kB 14 3 1 1.8 Yes No
groovy-docgenerator-4.0.9.jar 110.6 kB 68 49 1 1.8 Yes No
groovy-groovydoc-4.0.9.jar 144 kB 94 58 6 1.8 Yes No
groovy-groovysh-4.0.9.jar 420.5 kB 249 184 7 1.8 Yes No
groovy-jmx-4.0.9.jar 112.5 kB 57 50 2 1.8 Yes No
groovy-json-4.0.9.jar 129.8 kB 79 66 3 1.8 Yes No
groovy-jsr223-4.0.9.jar 16.9 kB 20 8 1 1.8 Yes No
groovy-macro-4.0.9.jar 243.2 kB 163 146 5 1.8 Yes No
groovy-nio-4.0.9.jar 16.1 kB 14 2 2 1.8 Yes No
groovy-servlet-4.0.9.jar 22.9 kB 18 12 1 1.8 Yes No
groovy-sql-4.0.9.jar 79.4 kB 79 66 2 1.8 Yes No
groovy-swing-4.0.9.jar 333.6 kB 231 212 8 1.8 Yes No
groovy-templates-4.0.9.jar 91 kB 57 50 2 1.8 Yes No
groovy-test-4.0.9.jar 69.8 kB 43 30 4 1.8 Yes No
groovy-test-junit5-4.0.9.jar 8.7 kB 12 3 1 1.8 Yes No
groovy-xml-4.0.9.jar 212.7 kB 149 131 7 1.8 Yes No
groovy-yaml-4.0.9.jar 6.2 kB 15 4 2 1.8 Yes No
ivy-2.5.1.jar 1.4 MB 881 773 65 1.8 Yes No
junit-jupiter-api-5.9.2.jar 207.8 kB 194 179 8 - Yes No
junit-jupiter-engine-5.9.2.jar 246.6 kB 151 134 9 - Yes No
junit-platform-commons-1.9.2.jar 103 kB 64 44 7 - Yes No
junit-platform-engine-1.9.2.jar 189.2 kB 143 127 9 - Yes No
junit-platform-launcher-1.9.2.jar 169.2 kB 120 105 7 - Yes No
opentest4j-1.2.0.jar 7.7 kB 11 7 2 - Yes No
asm-9.4.jar 122.4 kB 44 38 3 - Yes No
asm-analysis-9.4.jar 34.3 kB 22 15 2 - Yes No
asm-tree-9.4.jar 52.7 kB 45 39 2 - Yes No
asm-util-9.4.jar 91.5 kB 33 27 2 - Yes No
snakeyaml-1.33.jar 331.7 kB 263 225 21 1.7 Yes No
Total Size Entries Classes Packages Java Version Debug Information Sealed
188 112.3 MB 57719 51363 2715 1.8 167 1
compile: 164 compile: 99.3 MB compile: 49470 compile: 43662 compile: 2345 - compile: 145 compile: 1
test: 12 test: 9.8 MB test: 6316 test: 6007 test: 265 - test: 10 -
runtime: 12 runtime: 3.1 MB runtime: 1933 runtime: 1694 runtime: 105 - runtime: 12 -