Package ubic.gemma.model.analysis.expression.coexpression
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Class Summary Class Description CoexpCorrelationDistribution CoexpCorrelationDistribution.Factory CoexpressionAnalysis A coexpression analysis of one experiment.CoexpressionAnalysis.Factory GeneCoexpressedGenes Important: this is slightly misnamed, since it potentially includes links that have support of zero.GeneCoexpressionTestedIn Tracks the datasets in which coexpression for a gene has been tested.HumanCoexpressionSupportDetailsImpl IdArray Represents a set of IDs for entities (e.g., genes or experiments), stored in a bitSet.IdArrayValueObject MouseCoexpressionSupportDetailsImpl OtherCoexpressionSupportDetailsImpl RatCoexpressionSupportDetailsImpl SampleCoexpressionAnalysis The 'analysis' in the name is a bit of a stretch here, as this object servers purely as an aggregator of all the sample coexpression matrices.SampleCoexpressionMatrix Holds the data of the sample coexpression matrixSupportDetails Represents the datasets in which a link was found in ("supported").