Package ubic.gemma.persistence.service.analysis.expression.diff

Interface GeneDiffExMetaAnalysisService

All Superinterfaces:

AnalysisService<GeneDifferentialExpressionMetaAnalysis>, BaseImmutableService<GeneDifferentialExpressionMetaAnalysis>, BaseReadOnlyService<GeneDifferentialExpressionMetaAnalysis>

All Known Implementing Classes:

GeneDiffExMetaAnalysisServiceImpl

public interface GeneDiffExMetaAnalysisService
extends AnalysisService<GeneDifferentialExpressionMetaAnalysis>

Author:

Paul

Method Summary

Modifier and Type	Method	Description
GeneDifferentialExpressionMetaAnalysis	create(GeneDifferentialExpressionMetaAnalysis analysis)	Creates the given entity in the persistent storage.
BaseValueObject	delete(Long id)
Collection<GeneDifferentialExpressionMetaAnalysis>	findByTaxon(Taxon taxon)
Collection<IncludedResultSetInfoValueObject>	findIncludedResultSetsInfoById(long analysisId)
Collection<GeneDifferentialExpressionMetaAnalysisSummaryValueObject>	findMetaAnalyses(Collection<Long> metaAnalysisIds)
Collection<GeneDifferentialExpressionMetaAnalysisResultValueObject>	findResultsById(long analysisId)
GeneDifferentialExpressionMetaAnalysisResult	loadResult(Long idResult)
GeneDifferentialExpressionMetaAnalysis	loadWithResultId(Long idResult)

Methods inherited from interface ubic.gemma.persistence.service.analysis.AnalysisService

findByName, getExperimentsWithAnalysis, getExperimentsWithAnalysis, load, loadAll, remove

Methods inherited from interface ubic.gemma.persistence.service.BaseImmutableService

create, findOrCreate, remove, remove

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, loadOrFail, loadOrFail, loadOrFail, loadOrFail

Method Detail

create

@Secured("GROUP_USER")
GeneDifferentialExpressionMetaAnalysis create(GeneDifferentialExpressionMetaAnalysis analysis)

Description copied from interface: BaseImmutableService

Creates the given entity in the persistent storage.

Specified by:

create in interface BaseImmutableService<GeneDifferentialExpressionMetaAnalysis>

Parameters:

analysis - the entity to be created.

Returns:

object referencing the persistent instance of the given entity.

delete

@Secured("GROUP_USER")
BaseValueObject delete(Long id)

findByTaxon

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_COLLECTION_READ"})
Collection<GeneDifferentialExpressionMetaAnalysis> findByTaxon(Taxon taxon)

Specified by:

findByTaxon in interface AnalysisService<GeneDifferentialExpressionMetaAnalysis>

findIncludedResultSetsInfoById

Collection<IncludedResultSetInfoValueObject> findIncludedResultSetsInfoById(long analysisId)

findMetaAnalyses

@Secured({"IS_AUTHENTICATED_ANONYMOUSLY","AFTER_ACL_VALUE_OBJECT_COLLECTION_READ"})
Collection<GeneDifferentialExpressionMetaAnalysisSummaryValueObject> findMetaAnalyses(Collection<Long> metaAnalysisIds)

findResultsById

Collection<GeneDifferentialExpressionMetaAnalysisResultValueObject> findResultsById(long analysisId)

loadResult

GeneDifferentialExpressionMetaAnalysisResult loadResult(Long idResult)

loadWithResultId

GeneDifferentialExpressionMetaAnalysis loadWithResultId(Long idResult)