Package ubic.gemma.web.services

Class DEDVRankEndpoint

java.lang.Object

org.springframework.xml.transform.TransformerObjectSupport

org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

ubic.gemma.web.services.AbstractGemmaEndpoint

ubic.gemma.web.services.DEDVRankEndpoint

All Implemented Interfaces:

org.springframework.ws.server.endpoint.PayloadEndpoint

public class DEDVRankEndpoint
extends AbstractGemmaEndpoint

Given a collection of gene IDs, a collection of experiment IDs, and the method, the service will return a list of genes mapped to a list of space delimited ranks. Each rank in the space delimited result is ordered based on the a list of experiments returned in the field, "ee_ids". The output can be pictured as a matrix where the rows are the genes and the columns are the experiments. (Ranks are per-array based.) Method can be one of the following: MEAN or MAX

Author:

gavin

See Also:

ProcessedExpressionDataVectorDao.RankMethod

Field Summary

Fields inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint

DELIMITER, manualAuthenticationService, NAMESPACE_URI, REQUEST, RESPONSE

Fields inherited from class org.springframework.xml.transform.TransformerObjectSupport

logger

Constructor Summary

Constructors

Constructor	Description
DEDVRankEndpoint()

Method Summary

Modifier and Type	Method	Description
protected Element	invokeInternal(Element requestElement, Document document)	Reads the given requestElement, and sends a the response back.
void	setExpressionDataMatrixService(ubic.gemma.core.analysis.service.ExpressionDataMatrixService expressionDataMatrixService)
void	setExpressionExperimentService(ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentService expressionExperimentService)
void	setGeneService(ubic.gemma.core.genome.gene.service.GeneService geneService)	Sets the "business service" to delegate to.

Methods inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint

authenticate, buildBadResponse, buildWrapper, encode, getArrayValues, getLastSingleNodeValue, getNodeValue, getOptionalNodeValue, getSingleNodeValue, readReport, readReport, readReport, setLocalName, setManualAuthenticationService, writeReport

Methods inherited from class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

createDocumentBuilder, createDocumentBuilderFactory, getDocumentElement, invoke, setAlwaysTransform, setExpandEntityReferences, setNamespaceAware, setValidating

Methods inherited from class org.springframework.xml.transform.TransformerObjectSupport

createTransformer, getTransformerFactory, newTransformerFactory, setTransformerFactoryClass, transform

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DEDVRankEndpoint

public DEDVRankEndpoint()

Method Detail

setExpressionDataMatrixService

public void setExpressionDataMatrixService(ubic.gemma.core.analysis.service.ExpressionDataMatrixService expressionDataMatrixService)

setExpressionExperimentService

public void setExpressionExperimentService(ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentService expressionExperimentService)

setGeneService

public void setGeneService(ubic.gemma.core.genome.gene.service.GeneService geneService)

Sets the "business service" to delegate to.

invokeInternal

protected Element invokeInternal(Element requestElement,
                                 Document document)

Reads the given requestElement, and sends a the response back.

Specified by:

invokeInternal in class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

Parameters:

requestElement - the contents of the SOAP message as DOM elements

document - a DOM document to be used for constructing Nodes

Returns:

the response element