Package ubic.gemma.core.ontology

Interface FactorValueOntologyService

All Known Implementing Classes:

FactorValueOntologyServiceImpl

public interface FactorValueOntologyService

Ontology service for factor values and their annotations.

There are two kind of entities represented in his ontologies:

• Factor values (i.e. http://gemma.msl.ubc.ca/ont/TGFVO/1)
• Factor value annotations (i.e. http://gemma.msl.ubc.ca/ont/TGFVO/1/2) which can be either a subject, object or a characteristic

TODO: fully implement the OntologyService interface.

Nested Class Summary

Nested Classes

Modifier and Type	Interface	Description
static class	FactorValueOntologyService.OntologyStatement	Represents an ontology statement.

Method Summary

Modifier and Type	Method	Description
Set<OntologyIndividual>	getFactorValueAnnotations(String uri)	Obtain annotations belonging to the given URI representing a factor value.
Set<FactorValueOntologyService.OntologyStatement>	getFactorValueStatements(String uri)	Obtain statements related to the given URI representing a factor value.
OntologyIndividual	getIndividual(String uri)	Obtain an individual from the ontology by URI.
void	writeToRdf(String iri, Writer writer)

Method Detail

getIndividual

@Nullable
OntologyIndividual getIndividual(String uri)

Obtain an individual from the ontology by URI.

getFactorValueAnnotations

Set<OntologyIndividual> getFactorValueAnnotations(String uri)

Obtain annotations belonging to the given URI representing a factor value.

getFactorValueStatements

Set<FactorValueOntologyService.OntologyStatement> getFactorValueStatements(String uri)

Obtain statements related to the given URI representing a factor value.

writeToRdf

void writeToRdf(String iri,
                Writer writer)