Package ubic.gemma.core.datastructure.matrix

Class ExpressionDataDoubleMatrixUtilTest

  • public class ExpressionDataDoubleMatrixUtilTest
extends Object

    • Constructor Detail

      • ExpressionDataDoubleMatrixUtilTest

        public ExpressionDataDoubleMatrixUtilTest()

    • Method Detail

      • setUp

        public void setUp()

      • testLog2ShouldDoNothing

        public void testLog2ShouldDoNothing()

      • testLinearConversion

        public void testLinearConversion()

      • testLog10Conversion

        public void testLog10Conversion()

      • testCountConversion

        public void testCountConversion()

      • testInferredLogbaseDifferFromQuantitations

        public void testInferredLogbaseDifferFromQuantitations()

      • testCounts

        public void testCounts()

      • testCountsWhenPlatformIsNotSequencing

        public void testCountsWhenPlatformIsNotSequencing()

      • testCountsWhenValueIsNegativeTreatAsLogbaseUnknown

        public void testCountsWhenValueIsNegativeTreatAsLogbaseUnknown()

      • testCountsWhenPlatformIsMicroarrayThenReportAsLinear

        public void testCountsWhenPlatformIsMicroarrayThenReportAsLinear()

      • testPercent1

        public void testPercent1()

      • testPercent

        public void testPercent()

      • testZtransformed

        public void testZtransformed()

      • testZTransformedByMedian

        public void testZTransformedByMedian()

      • testZtransformedInLogSpace

        public void testZtransformedInLogSpace()

      • testIsLog10Ratiometric

        public void testIsLog10Ratiometric()

      • testLog2Ratiometric

        public void testLog2Ratiometric()

      • testRandomLinearMatrix

        public void testRandomLinearMatrix()

      • testRandomLog2Matrix

        public void testRandomLog2Matrix()

      • testRandomRatiometricLog2Matrix

        public void testRandomRatiometricLog2Matrix()

      • testRandomCountMatrix

        public void testRandomCountMatrix()

      • testRandomSuspiciousLog2Matrix

        public void testRandomSuspiciousLog2Matrix()