Package ubic.gemma.core.analysis.expression.diff

Class TwoWayAnovaWithInteractionsAnalyzerTest

java.lang.Object

org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

ubic.gemma.core.util.test.BaseIntegrationTest

ubic.gemma.core.util.test.BaseSpringContextTest

ubic.gemma.core.analysis.expression.diff.BaseAnalyzerConfigurationTest

ubic.gemma.core.analysis.expression.diff.TwoWayAnovaWithInteractionsAnalyzerTest

All Implemented Interfaces:

org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware

public class TwoWayAnovaWithInteractionsAnalyzerTest
extends BaseAnalyzerConfigurationTest

Tests the two way anova analyzer with interactions. See test/data/stat-tests/README.txt for R code.

Author:

keshav

Field Summary

Fields inherited from class ubic.gemma.core.analysis.expression.diff.BaseAnalyzerConfigurationTest

expressionDataMatrixService, processedExpressionDataVectorService

Fields inherited from class ubic.gemma.core.util.test.BaseSpringContextTest

externalDatabaseService, log, persisterHelper, rule, taxonService, testHelper

Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

applicationContext, logger

Constructor Summary

Constructors

Constructor	Description
TwoWayAnovaWithInteractionsAnalyzerTest()

Method Summary

Modifier and Type	Method	Description
void	testTwoWayAnova()

Methods inherited from class ubic.gemma.core.analysis.expression.diff.BaseAnalyzerConfigurationTest

setUp, tearDown

Methods inherited from class ubic.gemma.core.util.test.BaseSpringContextTest

addTestAnalyses, countRowsInTable, deleteFromTables, getJdbcTemplate, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setTestCollectionSize

Methods inherited from class ubic.gemma.core.util.test.BaseIntegrationTest

setUpAuthentication, tearDownSecurityContext

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

setApplicationContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TwoWayAnovaWithInteractionsAnalyzerTest

public TwoWayAnovaWithInteractionsAnalyzerTest()

Method Detail

testTwoWayAnova

public void testTwoWayAnova()