Package ubic.gemma.web.services

Class GoTerm2GeneEndpoint

java.lang.Object

org.springframework.xml.transform.TransformerObjectSupport

org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

ubic.gemma.web.services.AbstractGemmaEndpoint

ubic.gemma.web.services.GoTerm2GeneEndpoint

All Implemented Interfaces:

org.springframework.ws.server.endpoint.PayloadEndpoint

public class GoTerm2GeneEndpoint
extends AbstractGemmaEndpoint

Given a Gene Ontology Term URI and a Taxon ID as input, will return a collection of gene IDs that match the GO Term and Taxon.

Author:

gavin, klc

Field Summary

Fields

Modifier and Type	Field	Description
static String	GO2Gene_LOCAL_NAME	The local name of the expected request/response.

Fields inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint

DELIMITER, manualAuthenticationService, NAMESPACE_URI, REQUEST, RESPONSE

Fields inherited from class org.springframework.xml.transform.TransformerObjectSupport

logger

Constructor Summary

Constructors

Constructor	Description
GoTerm2GeneEndpoint()

Method Summary

Modifier and Type	Method	Description
protected Element	invokeInternal(Element requestElement, Document document)	Reads the given requestElement, and sends a the response back.
void	setGeneOntologyService(ubic.gemma.core.ontology.providers.GeneOntologyService goS)	Sets the "business service" to delegate to.
void	settaxonService(ubic.gemma.persistence.service.genome.taxon.TaxonService taxS)
void	setTaxonService(ubic.gemma.persistence.service.genome.taxon.TaxonService taxonService)

Methods inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint

authenticate, buildBadResponse, buildWrapper, encode, getArrayValues, getLastSingleNodeValue, getNodeValue, getOptionalNodeValue, getSingleNodeValue, readReport, readReport, readReport, setLocalName, setManualAuthenticationService, writeReport

Methods inherited from class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

createDocumentBuilder, createDocumentBuilderFactory, getDocumentElement, invoke, setAlwaysTransform, setExpandEntityReferences, setNamespaceAware, setValidating

Methods inherited from class org.springframework.xml.transform.TransformerObjectSupport

createTransformer, getTransformerFactory, newTransformerFactory, setTransformerFactoryClass, transform

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

GO2Gene_LOCAL_NAME

public static final String GO2Gene_LOCAL_NAME

The local name of the expected request/response.

See Also:

Constant Field Values

Constructor Detail

GoTerm2GeneEndpoint

public GoTerm2GeneEndpoint()

Method Detail

setGeneOntologyService

public void setGeneOntologyService(ubic.gemma.core.ontology.providers.GeneOntologyService goS)

Sets the "business service" to delegate to.

settaxonService

public void settaxonService(ubic.gemma.persistence.service.genome.taxon.TaxonService taxS)

setTaxonService

public void setTaxonService(ubic.gemma.persistence.service.genome.taxon.TaxonService taxonService)

invokeInternal

protected Element invokeInternal(Element requestElement,
                                 Document document)

Reads the given requestElement, and sends a the response back.

Specified by:

invokeInternal in class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

Parameters:

requestElement - the contents of the SOAP message as DOM elements

document - a DOM document to be used for constructing Nodes

Returns:

the response element