Uses of Interface
ubic.gemma.persistence.service.genome.gene.GeneService

Packages that use GeneService

Package	Description
ubic.gemma.core.analysis.expression.coexpression
ubic.gemma.core.analysis.service
ubic.gemma.core.loader.association.phenotype
ubic.gemma.core.loader.expression.arrayDesign
ubic.gemma.core.loader.genome.gene.ncbi.homology
ubic.gemma.persistence.service.genome.gene
ubic.gemma.persistence.util
ubic.gemma.rest
ubic.gemma.rest.util.args
ubic.gemma.web.services

Uses of GeneService in ubic.gemma.core.analysis.expression.coexpression

Constructors in ubic.gemma.core.analysis.expression.coexpression with parameters of type GeneService

Constructor	Description
GeneCoexpressionSearchServiceImpl(ExpressionExperimentService expressionExperimentService, CoexpressionService coexpressionService, CoexpressionAnalysisService coexpressionAnalysisService, GeneService geneService)

Uses of GeneService in ubic.gemma.core.analysis.service

Methods in ubic.gemma.core.analysis.service with parameters of type GeneService

Modifier and Type	Method	Description
void	CompositeSequenceGeneMapperService.setGeneService(GeneService geneService)

Uses of GeneService in ubic.gemma.core.loader.association.phenotype

Fields in ubic.gemma.core.loader.association.phenotype declared as GeneService

Modifier and Type	Field	Description
protected GeneService	ExternalDatabaseEvidenceImporterAbstractCLI.geneService	Deprecated.

Uses of GeneService in ubic.gemma.core.loader.expression.arrayDesign

Constructors in ubic.gemma.core.loader.expression.arrayDesign with parameters of type GeneService

Constructor

Description

ArrayDesignProbeMapperServiceImpl(AnnotationAssociationService annotationAssociationService, ArrayDesignAnnotationService arrayDesignAnnotationService, ArrayDesignReportService arrayDesignReportService, ArrayDesignService arrayDesignService, ProbeMapper probeMapper, BioSequenceService bioSequenceService, BlatResultService blatResultService, CompositeSequenceService compositeSequenceService, ExpressionDataFileService expressionDataFileService, GeneProductService geneProductService, GeneService geneService, Persister persisterHelper, org.springframework.core.task.TaskExecutor taskExecutor)

Uses of GeneService in ubic.gemma.core.loader.genome.gene.ncbi.homology

Constructors in ubic.gemma.core.loader.genome.gene.ncbi.homology with parameters of type GeneService

Constructor	Description
HomologeneServiceImpl(GeneService geneService, TaxonService taxonService, org.springframework.core.io.Resource homologeneFile)

Uses of GeneService in ubic.gemma.persistence.service.genome.gene

Classes in ubic.gemma.persistence.service.genome.gene that implement GeneService

Modifier and Type	Class	Description
class	GeneServiceImpl

Constructors in ubic.gemma.persistence.service.genome.gene with parameters of type GeneService

Constructor	Description
GeneSearchServiceImpl(SearchService searchService, gemma.gsec.SecurityService securityService, TaxonService taxonService, GeneSetSearch geneSetSearch, GeneSetService geneSetService, GeneService geneService, GeneOntologyService geneOntologyService, GeneSetValueObjectHelper geneSetValueObjectHelper)

Uses of GeneService in ubic.gemma.persistence.util

Methods in ubic.gemma.persistence.util with parameters of type GeneService

Modifier and Type	Method	Description
org.springframework.core.convert.ConversionService	ValueObjectConfig.valueObjectConversionService(ArrayDesignService arrayDesignService, BibliographicReferenceService bibliographicReferenceService, BioSequenceService bioSequenceService, CompositeSequenceService compositeSequenceService, ExpressionExperimentService expressionExperimentService, ExpressionExperimentSetService experimentSetService, GeneService geneService, GeneSetService geneSetService, BlacklistedEntityService blacklistedEntityService)

Uses of GeneService in ubic.gemma.rest

Constructors in ubic.gemma.rest with parameters of type GeneService

Constructor	Description
GeneWebService(GeneService geneService, GeneCoexpressionSearchService geneCoexpressionSearchService, GeneArgService geneArgService)	Constructor for service autowiring
PlatformsWebService(GeneService geneService, ArrayDesignService arrayDesignService, CompositeSequenceService compositeSequenceService, ArrayDesignAnnotationService annotationFileService, PlatformArgService arrayDesignArgService, CompositeSequenceArgService probeArgService)	Constructor for service autowiring

Uses of GeneService in ubic.gemma.rest.util.args

Method parameters in ubic.gemma.rest.util.args with type arguments of type GeneService

Modifier and Type	Method	Description
Gene	GeneArgService.getEntity(AbstractEntityArg<?,Gene,GeneService> entityArg)	Retrieve the entity represented by this argument.

Constructors in ubic.gemma.rest.util.args with parameters of type GeneService

Constructor	Description
GeneArgService(GeneService service, PhenotypeAssociationManagerService phenotypeAssociationManagerService, GeneOntologyService geneOntologyService, CompositeSequenceService compositeSequenceService)
TaxonArgService(TaxonService service, ChromosomeService chromosomeService, GeneService geneService)

Uses of GeneService in ubic.gemma.web.services

Methods in ubic.gemma.web.services with parameters of type GeneService

Modifier and Type	Method	Description
void	DEDVRankEndpoint.setGeneService(GeneService geneService)	Sets the "business service" to delegate to.
void	DifferentialExpressionProbeResultEndpoint.setGeneService(GeneService geneService)
void	Gene2GOdescriptionEndpoint.setGeneService(GeneService geneS)
void	Gene2GoTermEndpoint.setGeneService(GeneService geneS)
void	Gene2ProbeEndpoint.setGeneService(GeneService geneService)
void	GeneByNCBIIdEndpoint.setGeneService(GeneService geneS)	Sets the "business service" to delegate to.
void	GeneCoexpressionEndpoint.setGeneService(GeneService geneS)
void	GeneCoexpressionSearchEndpoint.setGeneService(GeneService geneService)
void	GeneDetailsByGeneIDEndpoint.setGeneService(GeneService geneS)	Sets the "business service" to delegate to.
void	GeneIDbyTaxonEndpoint.setGeneService(GeneService gs)	Sets the "business service" to delegate to.
void	GeneIdEndpoint.setGeneService(GeneService geneS)	Sets the "business service" to delegate to.
void	GeneNameEndpoint.setGeneService(GeneService geneS)	Sets the "business service" to delegate to.
void	GeneOverlapEndpoint.setGeneService(GeneService geneS)