Package ubic.gemma.core.tasks.analysis.expression

Class PreprocessTaskCommand

java.lang.Object

ubic.gemma.core.job.TaskCommand

ubic.gemma.core.tasks.analysis.expression.PreprocessTaskCommand

All Implemented Interfaces:

Serializable

public class PreprocessTaskCommand
extends TaskCommand

Command object for processing data vectors. Has dual purpose for updating the correlation matrices.

Author:

keshav

See Also:

Serialized Form

Field Summary

Fields inherited from class ubic.gemma.core.job.TaskCommand

MAX_QUEUING_MINUTES, MAX_RUNTIME_MINUTES

Constructor Summary

Constructors

Constructor	Description
PreprocessTaskCommand(ExpressionExperiment ee)

Method Summary

Modifier and Type	Method	Description
boolean	diagnosticsOnly()
ExpressionExperiment	getExpressionExperiment()
Class<? extends Task<? extends TaskCommand>>	getTaskClass()
void	setDiagnosticsOnly(boolean diagnosticsOnly)	If true, we'll try to just update the diagnostics (M-V, PCA and sample correlation)
void	setExpressionExperiment(ExpressionExperiment expressionExperiment)

Methods inherited from class ubic.gemma.core.job.TaskCommand

getEntityId, getMaxQueueMinutes, getMaxRuntime, getPersistJobDetails, getSecurityContext, getSubmitter, getTaskId, isEmailAlert, setEmailAlert, setEntityId, setMaxQueueMinutes, setMaxRuntime, setPersistJobDetails, setTaskId

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PreprocessTaskCommand

public PreprocessTaskCommand(ExpressionExperiment ee)

Method Detail

getExpressionExperiment

public ExpressionExperiment getExpressionExperiment()

setExpressionExperiment

public void setExpressionExperiment(ExpressionExperiment expressionExperiment)

getTaskClass

public Class<? extends Task<? extends TaskCommand>> getTaskClass()

Overrides:

getTaskClass in class TaskCommand

diagnosticsOnly

public boolean diagnosticsOnly()

setDiagnosticsOnly

public void setDiagnosticsOnly(boolean diagnosticsOnly)

If true, we'll try to just update the diagnostics (M-V, PCA and sample correlation)

Parameters:

diagnosticsOnly - whether to only update the diagnostics