Package ubic.gemma.rest

Class DatasetsWebServiceTest

java.lang.Object

org.glassfish.jersey.test.JerseyTest

ubic.gemma.rest.util.BaseJerseyTest

ubic.gemma.rest.DatasetsWebServiceTest

All Implemented Interfaces:

org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware

@ContextConfiguration
@TestExecutionListeners(WithSecurityContextTestExecutionListener.class)
public class DatasetsWebServiceTest
extends BaseJerseyTest

Constructor Summary

Constructors

Constructor	Description
DatasetsWebServiceTest()

Method Summary

Modifier and Type	Method	Description
void	resetMocks()
void	setUpMocks()
void	testGetBlacklistedDatasets()
void	testGetDatasetAnnotations()
void	testGetDatasetProcessedExpression()
void	testGetDatasetProcessedExpressionWhenNoProcessedVectorsExist()
void	testGetDatasetQuantitationTypes()
void	testGetDatasetRawExpression()
void	testGetDatasetRawExpressionByQuantitationType()
void	testGetDatasetRawExpressionByQuantitationTypeWhenQtIsNotFromTheDataset()
void	testGetDatasets()
void	testGetDatasetsAnnotations()
void	testGetDatasetsAnnotationsForUncategorizedTerms()
void	testGetDatasetsAnnotationsWhenMaxFrequencyIsSuppliedLimitMustUseMaximum()
void	testGetDatasetsAnnotationsWithLimitIsSupplied()
void	testGetDatasetsAnnotationsWithRetainMentionedTerms()
void	testGetDatasetsAnnotationWhenLimitExceedHardCap()
void	testGetDatasetsCategories()
void	testGetDatasetsDifferentialAnalysisResultsExpressionForGene()
void	testGetDatasetsDifferentialAnalysisResultsExpressionForGeneInTaxa()
void	testGetDatasetsOrderedByGeeqScore()
void	testGetDatasetsPlatformsUsageStatistics()
void	testGetDatasetsWhenInferenceTimeoutThenProduce503ServiceUnavailable()
void	testGetDatasetsWhenSliceHasNoLimit()
void	testGetDatasetsWithEmptyQuery()
void	testGetDatasetsWithQuery()
void	testGetDatasetsWithQueryAndSort()
void	testRefreshDataset()

Methods inherited from class ubic.gemma.rest.util.BaseJerseyTest

configure, configureClient, getTestContainerFactory, setApplicationContext, setUp, tearDown

Methods inherited from class org.glassfish.jersey.test.JerseyTest

client, close, closeIfNotNull, configureDeployment, disable, enable, forceDisable, forceEnable, forceSet, getAsyncTimeoutMultiplier, getBaseUri, getClient, getLastLoggedRecord, getLoggedRecords, getPort, isEnabled, set, set, setClient, target, target

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DatasetsWebServiceTest

public DatasetsWebServiceTest()

Method Detail

setUpMocks

public void setUpMocks()
                throws TimeoutException

Throws:

TimeoutException

resetMocks

public void resetMocks()

testGetDatasets

public void testGetDatasets()

testGetDatasetsWithQuery

public void testGetDatasetsWithQuery()
                              throws SearchException,
                                     TimeoutException

Throws:

SearchException

TimeoutException

testGetDatasetsWithQueryAndSort

public void testGetDatasetsWithQueryAndSort()
                                     throws SearchException,
                                            TimeoutException

Throws:

SearchException

TimeoutException

testGetDatasetsWithEmptyQuery

public void testGetDatasetsWithEmptyQuery()

testGetDatasetsWhenSliceHasNoLimit

public void testGetDatasetsWhenSliceHasNoLimit()

testGetDatasetsOrderedByGeeqScore

public void testGetDatasetsOrderedByGeeqScore()

testGetDatasetsWhenInferenceTimeoutThenProduce503ServiceUnavailable

public void testGetDatasetsWhenInferenceTimeoutThenProduce503ServiceUnavailable()
                                                                         throws TimeoutException

Throws:

TimeoutException

testGetDatasetsPlatformsUsageStatistics

public void testGetDatasetsPlatformsUsageStatistics()
                                             throws TimeoutException

Throws:

TimeoutException

testGetDatasetsAnnotationsWithRetainMentionedTerms

public void testGetDatasetsAnnotationsWithRetainMentionedTerms()
                                                        throws TimeoutException

Throws:

TimeoutException

testGetDatasetsAnnotations

public void testGetDatasetsAnnotations()
                                throws TimeoutException

Throws:

TimeoutException

testGetDatasetsAnnotationWhenLimitExceedHardCap

public void testGetDatasetsAnnotationWhenLimitExceedHardCap()

testGetDatasetsAnnotationsWhenMaxFrequencyIsSuppliedLimitMustUseMaximum

public void testGetDatasetsAnnotationsWhenMaxFrequencyIsSuppliedLimitMustUseMaximum()
                                                                             throws TimeoutException

Throws:

TimeoutException

testGetDatasetsAnnotationsWithLimitIsSupplied

public void testGetDatasetsAnnotationsWithLimitIsSupplied()
                                                   throws TimeoutException

Throws:

TimeoutException

testGetDatasetsAnnotationsForUncategorizedTerms

public void testGetDatasetsAnnotationsForUncategorizedTerms()
                                                     throws TimeoutException

Throws:

TimeoutException

testGetDatasetsCategories

public void testGetDatasetsCategories()

testGetDatasetQuantitationTypes

public void testGetDatasetQuantitationTypes()

testGetDatasetProcessedExpression

public void testGetDatasetProcessedExpression()
                                       throws IOException

Throws:

IOException

testGetDatasetProcessedExpressionWhenNoProcessedVectorsExist

public void testGetDatasetProcessedExpressionWhenNoProcessedVectorsExist()

testGetDatasetRawExpression

public void testGetDatasetRawExpression()
                                 throws IOException

Throws:

IOException

testGetDatasetRawExpressionByQuantitationTypeWhenQtIsNotFromTheDataset

public void testGetDatasetRawExpressionByQuantitationTypeWhenQtIsNotFromTheDataset()

testGetDatasetRawExpressionByQuantitationType

public void testGetDatasetRawExpressionByQuantitationType()
                                                   throws IOException

Throws:

IOException

testGetBlacklistedDatasets

public void testGetBlacklistedDatasets()

testGetDatasetAnnotations

public void testGetDatasetAnnotations()

testGetDatasetsDifferentialAnalysisResultsExpressionForGene

public void testGetDatasetsDifferentialAnalysisResultsExpressionForGene()

testGetDatasetsDifferentialAnalysisResultsExpressionForGeneInTaxa

public void testGetDatasetsDifferentialAnalysisResultsExpressionForGeneInTaxa()

testRefreshDataset

@WithMockUser
public void testRefreshDataset()