Package ubic.gemma.web.controller.genome

Class BlatResultTrackController

  • All Implemented Interfaces:
    org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware, org.springframework.web.context.ServletContextAware, org.springframework.web.servlet.mvc.Controller
    @Controller
public class BlatResultTrackController
extends org.springframework.web.servlet.mvc.AbstractController
    See goldenPath help on custom track. This simply generates text that can be used to view our alignments in the UCSC browser. For example, urls like the following would work:

    also this

    Where the 'id' is the id in our system of the BLAT result to be views, and www.example.ca should be replaced with ConfigUtils.getBaseUrl() (configured with gemma.baseurl)
    Author:
    pavlidis

    • Field Summary

      • Fields inherited from class org.springframework.web.servlet.support.WebContentGenerator

        METHOD_GET, METHOD_HEAD, METHOD_POST

      • Fields inherited from class org.springframework.context.support.ApplicationObjectSupport

        logger

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      protected org.springframework.web.servlet.ModelAndView handleRequestInternal​(javax.servlet.http.HttpServletRequest request, javax.servlet.http.HttpServletResponse response)  

      • Methods inherited from class org.springframework.web.servlet.mvc.AbstractController

        handleRequest, isSynchronizeOnSession, setSynchronizeOnSession

      • Methods inherited from class org.springframework.web.servlet.support.WebContentGenerator

        applyCacheSeconds, applyCacheSeconds, cacheForSeconds, cacheForSeconds, checkAndPrepare, checkAndPrepare, getCacheSeconds, getSupportedMethods, isAlwaysMustRevalidate, isRequireSession, isUseCacheControlHeader, isUseCacheControlNoStore, isUseExpiresHeader, preventCaching, setAlwaysMustRevalidate, setCacheSeconds, setRequireSession, setSupportedMethods, setUseCacheControlHeader, setUseCacheControlNoStore, setUseExpiresHeader

      • Methods inherited from class org.springframework.web.context.support.WebApplicationObjectSupport

        getServletContext, getTempDir, getWebApplicationContext, initApplicationContext, initServletContext, isContextRequired, setServletContext

      • Methods inherited from class org.springframework.context.support.ApplicationObjectSupport

        getApplicationContext, getMessageSourceAccessor, initApplicationContext, requiredContextClass, setApplicationContext

    • Constructor Detail

      • BlatResultTrackController

        public BlatResultTrackController()

    • Method Detail

      • handleRequestInternal

        protected org.springframework.web.servlet.ModelAndView handleRequestInternal​(javax.servlet.http.HttpServletRequest request,
                                                                             javax.servlet.http.HttpServletResponse response)
        Specified by:
        handleRequestInternal in class org.springframework.web.servlet.mvc.AbstractController