A B C D E F G H I J M O P R S T U W 
All Classes All Packages

A

accessDecisionManager() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
 
accessDecisionManager() - Method in class ubic.gemma.rest.SearchWebServiceTest.SearchWebServiceTestContextConfiguration
 
AnalysisResultSetsJerseyTest - Class in ubic.gemma.rest
Integration test for the result sets endpoint.
AnalysisResultSetsJerseyTest() - Constructor for class ubic.gemma.rest.AnalysisResultSetsJerseyTest
 
AnalysisResultSetsWebServiceTest - Class in ubic.gemma.rest
 
AnalysisResultSetsWebServiceTest() - Constructor for class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
analyticsProvider() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
 
analyticsProvider() - Method in class ubic.gemma.rest.SearchWebServiceTest.SearchWebServiceTestContextConfiguration
 
annotationsWebService(OntologyService, SearchService, CharacteristicService, ExpressionExperimentService, DatasetArgService, TaxonArgService) - Method in class ubic.gemma.rest.AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
 
AnnotationsWebServiceContextConfiguration() - Constructor for class ubic.gemma.rest.AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
 
AnnotationsWebServiceTest - Class in ubic.gemma.rest
 
AnnotationsWebServiceTest() - Constructor for class ubic.gemma.rest.AnnotationsWebServiceTest
 
AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration - Class in ubic.gemma.rest
 
Api() - Constructor for class ubic.gemma.rest.util.args.StringArrayArgTest.Api
 
arrayDesignService() - Method in class ubic.gemma.rest.SearchWebServiceTest.SearchWebServiceTestContextConfiguration
 
Assertions - Class in ubic.gemma.rest.util
Entrypoint for custom AssertJ assertions.
Assertions() - Constructor for class ubic.gemma.rest.util.Assertions
 
assertThat(Response) - Static method in class ubic.gemma.rest.util.Assertions
 
assertThat(Errors) - Static method in class ubic.gemma.rest.util.Assertions
 

B

BaseJerseyIntegrationTest - Class in ubic.gemma.rest.util
Base class for Jersey-based integration tests.
BaseJerseyIntegrationTest() - Constructor for class ubic.gemma.rest.util.BaseJerseyIntegrationTest
 
BaseJerseyTest - Class in ubic.gemma.rest.util
Base class for Jersey-based tests that needs a WebApplicationContext for loading and configuring or mocking Spring components.
BaseJerseyTest() - Constructor for class ubic.gemma.rest.util.BaseJerseyTest
 
buildInfo() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
 
buildInfo() - Method in class ubic.gemma.rest.SearchWebServiceTest.SearchWebServiceTestContextConfiguration
 

C

characteristicService() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
 
configure() - Method in class ubic.gemma.rest.providers.WebApplicationExceptionMapperTest
 
configure() - Method in class ubic.gemma.rest.util.BaseJerseyTest
 
configureClient(ClientConfig) - Method in class ubic.gemma.rest.util.BaseJerseyTest
 
cookies() - Method in class ubic.gemma.rest.util.ResponseAssert
 
CorsFilterTest - Class in ubic.gemma.rest.servlet
 
CorsFilterTest() - Constructor for class ubic.gemma.rest.servlet.CorsFilterTest
 
createFixtures() - Method in class ubic.gemma.rest.GeneWebServiceTest
 
createFixtures() - Method in class ubic.gemma.rest.TaxaWebServiceTest
 
CustomResource() - Constructor for class ubic.gemma.rest.providers.WebApplicationExceptionMapperTest.CustomResource
 

D

datasetRestService(ExpressionExperimentService, SearchService) - Method in class ubic.gemma.rest.AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
 
DatasetsRestTest - Class in ubic.gemma.rest
 
DatasetsRestTest() - Constructor for class ubic.gemma.rest.DatasetsRestTest
 
DatasetsWebServiceTest - Class in ubic.gemma.rest
 
DatasetsWebServiceTest() - Constructor for class ubic.gemma.rest.DatasetsWebServiceTest
 
doesNotHavePath(String) - Method in class ubic.gemma.rest.util.JsonAssert
Ensure that a given path does not exist.

E

entity() - Method in class ubic.gemma.rest.util.ResponseAssert
 
entityAs(Class<T>) - Method in class ubic.gemma.rest.util.ResponseAssert
 
entityAsStream() - Method in class ubic.gemma.rest.util.ResponseAssert
 
entityAsString() - Method in class ubic.gemma.rest.util.ResponseAssert
 
ErrorsAssert - Class in ubic.gemma.rest.util
 
ErrorsAssert(Errors) - Constructor for class ubic.gemma.rest.util.ErrorsAssert
 
expressionExperimentService() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
 

F

FactorValueValueObjectSerializerTest - Class in ubic.gemma.rest.serializers
 
FactorValueValueObjectSerializerTest() - Constructor for class ubic.gemma.rest.serializers.FactorValueValueObjectSerializerTest
 
FilterArgTest - Class in ubic.gemma.rest.util.args
 
FilterArgTest() - Constructor for class ubic.gemma.rest.util.args.FilterArgTest
 

G

GeneArgServiceTest - Class in ubic.gemma.rest.util.args
 
GeneArgServiceTest() - Constructor for class ubic.gemma.rest.util.args.GeneArgServiceTest
 
GeneWebServiceTest - Class in ubic.gemma.rest
 
GeneWebServiceTest() - Constructor for class ubic.gemma.rest.GeneWebServiceTest
 
getTestContainerFactory() - Method in class ubic.gemma.rest.providers.WebApplicationExceptionMapperTest
 
getTestContainerFactory() - Method in class ubic.gemma.rest.util.BaseJerseyTest
 
GoogleAnalytics4ProviderTest - Class in ubic.gemma.rest.analytics.ga4
 
GoogleAnalytics4ProviderTest() - Constructor for class ubic.gemma.rest.analytics.ga4.GoogleAnalytics4ProviderTest
 

H

hasEncoding(String) - Method in class ubic.gemma.rest.util.ResponseAssert
Asserts that the response has the given 'Content-Encoding' header.
hasFieldError(String, String, String) - Method in class ubic.gemma.rest.util.ErrorsAssert
Asserts that the errors object has a field error.
hasFieldError(String, String, String, Object) - Method in class ubic.gemma.rest.util.ErrorsAssert
Asserts that the errors object has a field error with a given rejected value.
hasGlobalError(String, String) - Method in class ubic.gemma.rest.util.ErrorsAssert
Asserts that the errors object has a global error.
hasHeader(String, String) - Method in class ubic.gemma.rest.util.ResponseAssert
Asserts that the response has the given header.
hasHeaderSatisfying(String, Consumer<List<String>>) - Method in class ubic.gemma.rest.util.ResponseAssert
 
hasLanguage(Locale) - Method in class ubic.gemma.rest.util.ResponseAssert
 
hasLength(int) - Method in class ubic.gemma.rest.util.ResponseAssert
 
hasMediaType(MediaType) - Method in class ubic.gemma.rest.util.ResponseAssert
Asserts that the response has the given media type.
hasMediaTypeCompatibleWith(MediaType) - Method in class ubic.gemma.rest.util.ResponseAssert
Asserts that the response has a media type compatible with the given media type.
hasPath(String) - Method in class ubic.gemma.rest.util.JsonAssert
Ensure that a given path exists.
hasPathWithValue(String, Object) - Method in class ubic.gemma.rest.util.JsonAssert
Ensure that a JSON path has the given value.
hasStatus(Response.Status) - Method in class ubic.gemma.rest.util.ResponseAssert
Asserts that the response has the given status code and reason phrase.
hasStatusFamily(Response.Status.Family) - Method in class ubic.gemma.rest.util.ResponseAssert
Asserts that that response status is within the given status family.
headers() - Method in class ubic.gemma.rest.util.ResponseAssert
 

I

indexAsJson() - Method in class ubic.gemma.rest.providers.WebApplicationExceptionMapperTest.CustomResource
 
indexAsString() - Method in class ubic.gemma.rest.providers.WebApplicationExceptionMapperTest.CustomResource
 

J

json() - Static method in class ubic.gemma.rest.util.JsonAssert
 
JsonAssert - Class in ubic.gemma.rest.util
Assertions for JSON based on JsonPath.
JsonAssert(String) - Constructor for class ubic.gemma.rest.util.JsonAssert
 

M

mockitoRule - Variable in class ubic.gemma.rest.util.args.FilterArgTest
 
MyModel() - Constructor for class ubic.gemma.rest.providers.WebApplicationExceptionMapperTest.CustomResource.MyModel
 

O

ontologyService() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
 
openApi() - Method in class ubic.gemma.rest.SearchWebServiceTest.SearchWebServiceTestContextConfiguration
 
openAPI() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
 
OpenApiTest - Class in ubic.gemma.rest
 
OpenApiTest() - Constructor for class ubic.gemma.rest.OpenApiTest
 

P

placeholderConfigurer() - Static method in class ubic.gemma.rest.AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
 
placeholderConfigurer() - Static method in class ubic.gemma.rest.SearchWebServiceTest.SearchWebServiceTestContextConfiguration
 
platformArgService(ArrayDesignService) - Method in class ubic.gemma.rest.SearchWebServiceTest.SearchWebServiceTestContextConfiguration
 
PlatformsWebServiceTest - Class in ubic.gemma.rest
 
PlatformsWebServiceTest() - Constructor for class ubic.gemma.rest.PlatformsWebServiceTest
 

R

removeFixtures() - Method in class ubic.gemma.rest.AnalysisResultSetsJerseyTest
 
removeFixtures() - Method in class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
removeFixtures() - Method in class ubic.gemma.rest.GeneWebServiceTest
 
removeFixtures() - Method in class ubic.gemma.rest.PlatformsWebServiceTest
 
removeFixtures() - Method in class ubic.gemma.rest.TaxaWebServiceTest
 
resetMocks() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest
 
resetMocks() - Method in class ubic.gemma.rest.DatasetsRestTest
 
resetMocks() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
resetMocks() - Method in class ubic.gemma.rest.SearchWebServiceTest
 
resetMocks() - Method in class ubic.gemma.rest.util.args.GeneArgServiceTest
 
ResponseAssert - Class in ubic.gemma.rest.util
Assertions for jax-rs Response.
ResponseAssert(Response) - Constructor for class ubic.gemma.rest.util.ResponseAssert
 
RestapidocsIndexRewriteFilterTest - Class in ubic.gemma.rest.servlet
 
RestapidocsIndexRewriteFilterTest() - Constructor for class ubic.gemma.rest.servlet.RestapidocsIndexRewriteFilterTest
 
RootWebServiceTest - Class in ubic.gemma.rest
 
RootWebServiceTest() - Constructor for class ubic.gemma.rest.RootWebServiceTest
 

S

search(StringArrayArg) - Method in class ubic.gemma.rest.util.args.StringArrayArgTest.Api
 
searchService() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
 
searchService() - Method in class ubic.gemma.rest.SearchWebServiceTest.SearchWebServiceTestContextConfiguration
 
searchWebService() - Method in class ubic.gemma.rest.SearchWebServiceTest.SearchWebServiceTestContextConfiguration
 
SearchWebServiceTest - Class in ubic.gemma.rest
 
SearchWebServiceTest() - Constructor for class ubic.gemma.rest.SearchWebServiceTest
 
SearchWebServiceTest.SearchWebServiceTestContextConfiguration - Class in ubic.gemma.rest
 
SearchWebServiceTestContextConfiguration() - Constructor for class ubic.gemma.rest.SearchWebServiceTest.SearchWebServiceTestContextConfiguration
 
setApplicationContext(ApplicationContext) - Method in class ubic.gemma.rest.util.BaseJerseyTest
 
setUp() - Method in class ubic.gemma.rest.analytics.ga4.GoogleAnalytics4ProviderTest
 
setUp() - Method in class ubic.gemma.rest.util.BaseJerseyTest
This is intentionally made final to prevent subclasses from overriding.
setUpAuthentication() - Method in class ubic.gemma.rest.util.BaseJerseyIntegrationTest
 
setupMocks() - Method in class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
setupMocks() - Method in class ubic.gemma.rest.util.args.GeneArgServiceTest
 
setUpMocks() - Method in class ubic.gemma.rest.AnalysisResultSetsJerseyTest
 
setUpMocks() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest
 
setUpMocks() - Method in class ubic.gemma.rest.DatasetsRestTest
 
setUpMocks() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
setUpMocks() - Method in class ubic.gemma.rest.PlatformsWebServiceTest
 
setUpMocks() - Method in class ubic.gemma.rest.SearchWebServiceTest
 
SortArgTest - Class in ubic.gemma.rest.util.args
 
SortArgTest() - Constructor for class ubic.gemma.rest.util.args.SortArgTest
 
SortValueObjectTest - Class in ubic.gemma.rest.util
 
SortValueObjectTest() - Constructor for class ubic.gemma.rest.util.SortValueObjectTest
 
StringArrayArgTest - Class in ubic.gemma.rest.util.args
 
StringArrayArgTest() - Constructor for class ubic.gemma.rest.util.args.StringArrayArgTest
 
StringArrayArgTest.Api - Class in ubic.gemma.rest.util.args
 

T

TaxaWebServiceTest - Class in ubic.gemma.rest
 
TaxaWebServiceTest() - Constructor for class ubic.gemma.rest.TaxaWebServiceTest
 
taxonArgService(TaxonService) - Method in class ubic.gemma.rest.AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
 
taxonArgService(TaxonService) - Method in class ubic.gemma.rest.SearchWebServiceTest.SearchWebServiceTestContextConfiguration
 
TaxonArgServiceTest - Class in ubic.gemma.rest.util.args
 
TaxonArgServiceTest() - Constructor for class ubic.gemma.rest.util.args.TaxonArgServiceTest
 
taxonService() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
 
taxonService() - Method in class ubic.gemma.rest.SearchWebServiceTest.SearchWebServiceTestContextConfiguration
 
tearDown() - Method in class ubic.gemma.rest.analytics.ga4.GoogleAnalytics4ProviderTest
 
tearDown() - Method in class ubic.gemma.rest.util.args.TaxonArgServiceTest
 
tearDown() - Method in class ubic.gemma.rest.util.BaseJerseyTest
This is intentionally made final to prevent subclasses from overriding.
tearDownSecurityContext() - Method in class ubic.gemma.rest.util.BaseJerseyIntegrationTest
Clear the SecurityContextHolder so that subsequent tests don't inherit authentication.
test() - Method in class ubic.gemma.rest.analytics.ga4.GoogleAnalytics4ProviderTest
 
test() - Method in class ubic.gemma.rest.RootWebServiceTest
 
test() - Method in class ubic.gemma.rest.serializers.FactorValueValueObjectSerializerTest
 
test() - Method in class ubic.gemma.rest.servlet.RestapidocsIndexRewriteFilterTest
 
test() - Method in class ubic.gemma.rest.util.SortValueObjectTest
 
testAll() - Method in class ubic.gemma.rest.DatasetsRestTest
 
testAll() - Method in class ubic.gemma.rest.PlatformsWebServiceTest
 
testAll() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testAllFilterById() - Method in class ubic.gemma.rest.DatasetsRestTest
 
testAllFilterByIdIn() - Method in class ubic.gemma.rest.DatasetsRestTest
 
testAllFilterByIdInOrShortNameIn() - Method in class ubic.gemma.rest.DatasetsRestTest
 
testAllFilterByShortName() - Method in class ubic.gemma.rest.DatasetsRestTest
 
testAllFilterByShortNameIn() - Method in class ubic.gemma.rest.DatasetsRestTest
 
testAllWithTooLargeLimit() - Method in class ubic.gemma.rest.DatasetsRestTest
 
testAny() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testBase64EncodedFilter() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testBase64EncodedFilter() - Method in class ubic.gemma.rest.util.args.StringArrayArgTest
 
testBlankMeasurementId() - Method in class ubic.gemma.rest.analytics.ga4.GoogleAnalytics4ProviderTest
 
testChildren() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest
 
testConjunction() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testConjunctionOfDisjunctions() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testDirectionParsing() - Method in class ubic.gemma.rest.util.args.SortArgTest
 
testDisjunction() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testEmptyArray() - Method in class ubic.gemma.rest.util.args.StringArrayArgTest
 
testEmptyBase64EncodedArray() - Method in class ubic.gemma.rest.util.args.StringArrayArgTest
 
testEmptyFilter() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testEmptySortArg() - Method in class ubic.gemma.rest.util.args.SortArgTest
 
testEnsemblId() - Method in class ubic.gemma.rest.util.args.GeneArgServiceTest
 
testEnsureThatAllEndpointHaveASuccessOrRedirection() - Method in class ubic.gemma.rest.OpenApiTest
 
testEnsureThatAllErrorResponsesUseResponseErrorObjectWithJsonMediaType() - Method in class ubic.gemma.rest.OpenApiTest
 
testExamplesFromClasspath() - Method in class ubic.gemma.rest.OpenApiTest
 
testExternalDocumentationUrlIsReplaced() - Method in class ubic.gemma.rest.OpenApiTest
 
testFilterArgSchemas() - Method in class ubic.gemma.rest.OpenApiTest
 
testFilterByGeeqQualityScore() - Method in class ubic.gemma.rest.DatasetsRestTest
 
testFindAllWhenDatabaseEntryDoesNotExistThenRaise404NotFound() - Method in class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
testFindAllWhenDatasetDoesNotExistThenRaise404NotFound() - Method in class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
testFindAllWhenNoDatasetsAreProvidedThenReturnLatestAnalysisResults() - Method in class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
testFindAllWithDatabaseEntriesThenReturnLatestAnalysisResults() - Method in class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
testFindAllWithDatasetIdsThenReturnLatestAnalysisResults() - Method in class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
testFindAllWithFilters() - Method in class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
testFindAllWithFiltersAndCollections() - Method in class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
testFindAllWithInvalidFilters() - Method in class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
testFindByIdThenReturn200Success() - Method in class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
testFindByIdToTsv() - Method in class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
testFindByIdWhenExcludeResultsThenReturn200Success() - Method in class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
testFindByIdWhenInvalidIdentifierThenThrowMalformedArgException() - Method in class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
testFindByIdWhenResultSetDoesNotExistsThenReturn404NotFoundError() - Method in class ubic.gemma.rest.AnalysisResultSetsWebServiceTest
 
testFindByOfficialSymbol() - Method in class ubic.gemma.rest.util.args.GeneArgServiceTest
 
testFindByOfficialSymbolAndTaxon() - Method in class ubic.gemma.rest.util.args.GeneArgServiceTest
 
testFutureEvent() - Method in class ubic.gemma.rest.analytics.ga4.GoogleAnalytics4ProviderTest
 
testGeneGoTerms() - Method in class ubic.gemma.rest.GeneWebServiceTest
 
testGeneLocations() - Method in class ubic.gemma.rest.GeneWebServiceTest
 
testGeneProbes() - Method in class ubic.gemma.rest.GeneWebServiceTest
 
testGeneProbesWhenIdentifierIsAmbiguous() - Method in class ubic.gemma.rest.GeneWebServiceTest
 
testGenes() - Method in class ubic.gemma.rest.GeneWebServiceTest
 
testGenesByIds() - Method in class ubic.gemma.rest.GeneWebServiceTest
 
testGetBlacklistedDatasets() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetBlacklistedPlatforms() - Method in class ubic.gemma.rest.PlatformsWebServiceTest
 
testGetBlacklistedPlatformsAsNonAdmin() - Method in class ubic.gemma.rest.PlatformsWebServiceTest
 
testGetDatasetAnnotations() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetProcessedExpression() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetProcessedExpressionWhenNoProcessedVectorsExist() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetQuantitationTypes() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetRawExpression() - Method in class ubic.gemma.rest.DatasetsRestTest
 
testGetDatasetRawExpression() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetRawExpressionByQuantitationType() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetRawExpressionByQuantitationTypeWhenQtIsNotFromTheDataset() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasets() - Method in class ubic.gemma.rest.AnalysisResultSetsJerseyTest
 
testGetDatasets() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsAnnotations() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsAnnotationsForUncategorizedTerms() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsAnnotationsWhenMaxFrequencyIsSuppliedLimitMustUseMaximum() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsAnnotationsWithLimitIsSupplied() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsAnnotationsWithRetainMentionedTerms() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsAnnotationWhenLimitExceedHardCap() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsCategories() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsCategories() - Method in class ubic.gemma.rest.OpenApiTest
 
testGetDatasetsDifferentialAnalysisResultsExpressionForGene() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsDifferentialAnalysisResultsExpressionForGeneInTaxa() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsOrderedByGeeqScore() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsPlatformsUsageStatistics() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsWhenInferenceTimeoutThenProduce503ServiceUnavailable() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsWhenSliceHasNoLimit() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsWithEmptyQuery() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsWithQuery() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetDatasetsWithQueryAndSort() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testGetFilters() - Method in class ubic.gemma.rest.util.args.TaxonArgServiceTest
 
testGetPlatforms() - Method in class ubic.gemma.rest.AnalysisResultSetsJerseyTest
 
testGetResultSets() - Method in class ubic.gemma.rest.AnalysisResultSetsJerseyTest
 
testGetSort() - Method in class ubic.gemma.rest.util.args.SortArgTest
 
testGetSortWhenFieldDoesNotExistThenRaiseMalformedArgumentException() - Method in class ubic.gemma.rest.util.args.SortArgTest
 
testInfoMatchContentOfOpenApiConfiguration() - Method in class ubic.gemma.rest.OpenApiTest
 
testInvalidEvent() - Method in class ubic.gemma.rest.analytics.ga4.GoogleAnalytics4ProviderTest
 
testInvalidFilter() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testJsonRepresentation() - Method in class ubic.gemma.rest.providers.WebApplicationExceptionMapperTest
 
testLimitArgIs5000ForGetDatasetsAnnotations() - Method in class ubic.gemma.rest.OpenApiTest
 
testNcbiId() - Method in class ubic.gemma.rest.util.args.GeneArgServiceTest
 
testNone() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testOpenApiEndpoint() - Method in class ubic.gemma.rest.AnalysisResultSetsJerseyTest
 
testParametersAnnotatedWithExplode() - Method in class ubic.gemma.rest.util.args.StringArrayArgTest
 
testParents() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest
 
testParentsWhenInferenceTimeout() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest
 
testParentsWhenTermIsNotFound() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest
 
testParseCollection() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testParseDate() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testParseEmptyCollectionRaisesMalformedArgException() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testParseInvalidOperator() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testParseString() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testParseStringUnescapeQuote() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testParseSubqueryWithEmptyCollectionRaisesMalformedArgException() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testPlatformDatasets() - Method in class ubic.gemma.rest.PlatformsWebServiceTest
 
testPlatformElements() - Method in class ubic.gemma.rest.PlatformsWebServiceTest
 
testPreflightRequest() - Method in class ubic.gemma.rest.servlet.CorsFilterTest
 
testPreflightRequestWithCredentials() - Method in class ubic.gemma.rest.servlet.CorsFilterTest
 
testPreflightRequestWithCredentialsAndInvalidOrigin() - Method in class ubic.gemma.rest.servlet.CorsFilterTest
 
testPreflightRequestWithMaxAge() - Method in class ubic.gemma.rest.servlet.CorsFilterTest
 
testPropertyStartingWithGzipMagicNumber() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testRedirection() - Method in class ubic.gemma.rest.AnalysisResultSetsJerseyTest
 
testRefreshDataset() - Method in class ubic.gemma.rest.DatasetsWebServiceTest
 
testRequestWithCredentials() - Method in class ubic.gemma.rest.servlet.CorsFilterTest
 
testRequestWithOrigin() - Method in class ubic.gemma.rest.servlet.CorsFilterTest
 
testRequestWithoutOrigin() - Method in class ubic.gemma.rest.servlet.CorsFilterTest
 
testReservedEventName() - Method in class ubic.gemma.rest.analytics.ga4.GoogleAnalytics4ProviderTest
 
testSearchableProperties() - Method in class ubic.gemma.rest.OpenApiTest
 
testSearchByArrayDesign() - Method in class ubic.gemma.rest.SearchWebServiceTest
 
testSearchByTaxon() - Method in class ubic.gemma.rest.SearchWebServiceTest
 
testSearchEverything() - Method in class ubic.gemma.rest.SearchWebServiceTest
 
testSearchTaxonDatasets() - Method in class ubic.gemma.rest.AnnotationsWebServiceTest
 
testSearchWhenQueryIsEmpty() - Method in class ubic.gemma.rest.SearchWebServiceTest
 
testSearchWhenQueryIsMissing() - Method in class ubic.gemma.rest.SearchWebServiceTest
 
testSearchWhenUnknownPlatformIsProvided() - Method in class ubic.gemma.rest.SearchWebServiceTest
 
testSearchWhenUnknownTaxonIsProvided() - Method in class ubic.gemma.rest.SearchWebServiceTest
 
testSearchWhenUnsupportedResultTypeIsProvided() - Method in class ubic.gemma.rest.SearchWebServiceTest
 
testSearchWithInvalidQuery() - Method in class ubic.gemma.rest.SearchWebServiceTest
 
testSimpleEquality() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testSomeById() - Method in class ubic.gemma.rest.DatasetsRestTest
 
testSomeByShortName() - Method in class ubic.gemma.rest.DatasetsRestTest
 
testSortArgSchemas() - Method in class ubic.gemma.rest.OpenApiTest
 
testSortArgWithoutField() - Method in class ubic.gemma.rest.util.args.SortArgTest
 
testStringCannotContainSpace() - Method in class ubic.gemma.rest.util.args.FilterArgTest
 
testTaxonByCommonName() - Method in class ubic.gemma.rest.TaxaWebServiceTest
 
testTaxonById() - Method in class ubic.gemma.rest.TaxaWebServiceTest
 
testTaxonByNcbiId() - Method in class ubic.gemma.rest.TaxaWebServiceTest
 
testTaxonByScientificName() - Method in class ubic.gemma.rest.TaxaWebServiceTest
 
testTaxonDatasetsByNcbiId() - Method in class ubic.gemma.rest.TaxaWebServiceTest
 
testTaxonGeneGoTerms() - Method in class ubic.gemma.rest.TaxaWebServiceTest
 
testTaxonGeneLocations() - Method in class ubic.gemma.rest.TaxaWebServiceTest
 
testTaxonGeneProbes() - Method in class ubic.gemma.rest.TaxaWebServiceTest
 
testTaxonGenes() - Method in class ubic.gemma.rest.TaxaWebServiceTest
 
testTaxonGenesByIds() - Method in class ubic.gemma.rest.TaxaWebServiceTest
 
testTextRepresentation() - Method in class ubic.gemma.rest.providers.WebApplicationExceptionMapperTest
 
testUnmappedRoute() - Method in class ubic.gemma.rest.AnalysisResultSetsJerseyTest
 
testValueOf() - Method in class ubic.gemma.rest.util.args.SortArgTest
 
testWithDifferentPath() - Method in class ubic.gemma.rest.servlet.RestapidocsIndexRewriteFilterTest
 
testWithoutTrailingSlash() - Method in class ubic.gemma.rest.servlet.RestapidocsIndexRewriteFilterTest
 
testWithQuery() - Method in class ubic.gemma.rest.servlet.RestapidocsIndexRewriteFilterTest
 

U

ubic.gemma.rest - package ubic.gemma.rest
 
ubic.gemma.rest.analytics.ga4 - package ubic.gemma.rest.analytics.ga4
 
ubic.gemma.rest.providers - package ubic.gemma.rest.providers
 
ubic.gemma.rest.serializers - package ubic.gemma.rest.serializers
 
ubic.gemma.rest.servlet - package ubic.gemma.rest.servlet
 
ubic.gemma.rest.util - package ubic.gemma.rest.util
 
ubic.gemma.rest.util.args - package ubic.gemma.rest.util.args
 

W

WebApplicationExceptionMapperTest - Class in ubic.gemma.rest.providers
 
WebApplicationExceptionMapperTest() - Constructor for class ubic.gemma.rest.providers.WebApplicationExceptionMapperTest
 
WebApplicationExceptionMapperTest.CustomResource - Class in ubic.gemma.rest.providers
This is a very simplisitc example that produces two representation for the same resource.
WebApplicationExceptionMapperTest.CustomResource.MyModel - Class in ubic.gemma.rest.providers
 
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