GeneOntologyUtils (Gemma 1.31.13-SNAPSHOT API)

java.lang.Object
- ubic.gemma.core.ontology.providers.GeneOntologyUtils

public class GeneOntologyUtils
extends Object

Constructor Summary

Constructors
Constructor Description

GeneOntologyUtils()

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method	Description
`static String`	`asRegularGoId(String uri)`	Convert various GO IDs formats to the usual format, e.g., GO:0039392.
`static String`	`asRegularGoId(OntologyTerm term)`	Convert various GO IDs formats to the usual format, e.g., GO:0039392.
`static String`	`asRegularGoId(Characteristic c)`	Convert a characteristic to a regular GO ID.
`static boolean`	`isGoId(String s)`	Check if a given string is a GO ID.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - GeneOntologyUtils
```
public GeneOntologyUtils()
```
- Method Detail
  - isGoId
```
public static boolean isGoId(String s)
```
    Check if a given string is a GO ID.
  - asRegularGoId
```
@Nullable
public static String asRegularGoId(OntologyTerm term)
```
    Convert various GO IDs formats to the usual format, e.g., GO:0039392.
    
    Parameters:
    
    term - ontology term
    
    Returns:
    
    Usual formatted GO id, e.g., GO:0039392 or null for a free-text term
  - asRegularGoId
```
@Nullable
public static String asRegularGoId(Characteristic c)
```
    Convert a characteristic to a regular GO ID.
  - asRegularGoId
```
@Nullable
public static String asRegularGoId(String uri)
```
    Convert various GO IDs formats to the usual format, e.g., GO:0039392.
    
    Returns:
    
    a regular GO ID or null if the input is null or not a reckognized GO ID format