Package ubic.gemma.core.loader.entrez

Class EutilFetch

java.lang.Object

ubic.gemma.core.loader.entrez.EutilFetch

public class EutilFetch
extends Object

Author:

paul

Constructor Summary

Constructors

Constructor	Description
EutilFetch(String apiKey)

Method Summary

Modifier and Type	Method	Description
String	fetch(String db, String searchString, int limit)	Attempts to fetch data via Eutils; failures will be re-attempted several times.
Collection<String>	query(String db, String query)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

EutilFetch

public EutilFetch(String apiKey)

Method Detail

fetch

@Nullable
public String fetch(String db,
                    String searchString,
                    int limit)
             throws IOException

Attempts to fetch data via Eutils; failures will be re-attempted several times.

See ncbi help

Parameters:

db - e.g., gds.

searchString - search string

limit - - Maximum number of records to return.

Throws:

IOException - if there is a problem while manipulating the file

query

public Collection<String> query(String db,
                                String query)
                         throws IOException

Throws:

IOException