Package ubic.gemma.core.analysis.service
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Interface Summary Interface Description ArrayDesignAnnotationService Methods to generate annotations for array designs, based on information already in the database.DifferentialExpressionAnalysisResultListFileService File service for arbitrary list ofDifferentialExpressionAnalysisResult.ExpressionAnalysisResultSetFileService ExpressionDataFileService ExpressionDataMatrixService Tools for easily getting data matrices for analysis in a consistent way.FileService<T> Interface for a service that serialize entities.GeneMultifunctionalityPopulationService Populate/update the gene multifunctionality information in the system.JsonFileService<T> Interface for service that provides JSON serialization.OutlierFlaggingService TsvFileService<T> Interface for services that produce TSV serialization. -
Class Summary Class Description AbstractFileService<T> Provide base implementation for all sorts of file services that serialize data in tabular format.ArrayDesignAnnotationServiceImpl CompositeSequenceGeneMapperService DifferentialExpressionAnalysisResultListFileServiceImpl ExpressionAnalysisResultSetFileServiceImpl ExpressionDataFileServiceImpl Supports the creation and location of 'flat file' versions of data in the system, for download by users.ExpressionDataMatrixServiceImpl Tools for easily getting data matrices for analysis in a consistent way.ExpressionExperimentVectorManipulatingService GeneMultifunctionalityPopulationServiceImpl Compute gene multifunctionality and store it in the database.OutlierFlaggingServiceImpl Service for removing sample(s) from an expression experiment. -
Enum Summary Enum Description ArrayDesignAnnotationService.OutputType