| AffyChipTypeExtractor |
Extract the chip type from Affymetrix CEL files.
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| AffyProbeReader |
Reads Affymetrix Probe files, including exon arrays.
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| ArrayDesignMergeHelperServiceImpl |
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| ArrayDesignMergeServiceImpl |
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| ArrayDesignParser |
Deprecated. |
| ArrayDesignProbeMapperServiceImpl |
For an array design, generate gene product mappings for the sequences.
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| ArrayDesignSequenceAlignmentServiceImpl |
Aligns sequences from array designs to the genome, using blat, and persists the blat results.
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| ArrayDesignSequenceProcessingServiceImpl |
Handles collapsing the sequences, attaching sequences to DesignElements, either from provided input or via a fetch.
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| CompositeSequenceParser |
Parse the "old" array description format.
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| IlluminaProbeReader |
Parse an Illumina "manifest.txt" file (tab-delimited).
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| Reporter |
A "probe" (Affymetrix); for other types of arrays, there is no practical distinction between compositesequences and
reporters, and all analysis would take place at the level of CompositeSequences.
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| Reporter.Factory |
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