Package ubic.gemma.persistence.service.expression.experiment

Class ExpressionExperimentSetValueObjectHelperImpl

java.lang.Object

ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentSetValueObjectHelperImpl

All Implemented Interfaces:

ExpressionExperimentSetValueObjectHelper

@Component
public class ExpressionExperimentSetValueObjectHelperImpl
extends Object
implements ExpressionExperimentSetValueObjectHelper

This class will handle population of ExpressionExperimentSetValueObjects. Services need to be accessed in order to fill size, experiment ids, and publik/private fields.

Author:

tvrossum

Constructor Summary

Constructors

Constructor	Description
ExpressionExperimentSetValueObjectHelperImpl(ExpressionExperimentSetService expressionExperimentSetService, ExpressionExperimentService expressionExperimentService, TaxonService taxonService, gemma.gsec.SecurityService securityService)

Method Summary

Modifier and Type	Method	Description
ExpressionExperimentSet	convertToEntity(ExpressionExperimentSetValueObject setVO)	Tries to load an existing experiment set with the param's id, if no experiment can be loaded, create a new one with id = null.
ExpressionExperimentSet	create(ExpressionExperimentSetValueObject eesvo)	Create an experiment set from a VO.
void	delete(ExpressionExperimentSetValueObject eesvo)	Delete the experiment set corresponding to the given VO.
void	update(ExpressionExperimentSetValueObject eesvo)	Update corresponding entity based on value object
void	updateMembers(Long groupId, Collection<Long> eeIds)	Updates the database record for the param experiment set value object (permission permitting) with the members specified of the set, not the name or description etc.
ExpressionExperimentSetValueObject	updateNameAndDescription(ExpressionExperimentSetValueObject eeSetVO, boolean loadEEIds)	Updates the database record for the param experiment set value object (permission permitting) with the value object's name and description.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExpressionExperimentSetValueObjectHelperImpl

@Autowired
public ExpressionExperimentSetValueObjectHelperImpl(ExpressionExperimentSetService expressionExperimentSetService,
                                                    ExpressionExperimentService expressionExperimentService,
                                                    TaxonService taxonService,
                                                    gemma.gsec.SecurityService securityService)

Method Detail

create

@Transactional
public ExpressionExperimentSet create(ExpressionExperimentSetValueObject eesvo)

Description copied from interface: ExpressionExperimentSetValueObjectHelper

Create an experiment set from a VO.

The set is made public if ExpressionExperimentSetValueObject.getIsPublic() is true, otherwise it is made private.

Specified by:

create in interface ExpressionExperimentSetValueObjectHelper

update

@Transactional
public void update(ExpressionExperimentSetValueObject eesvo)

Description copied from interface: ExpressionExperimentSetValueObjectHelper

Update corresponding entity based on value object

Specified by:

update in interface ExpressionExperimentSetValueObjectHelper

updateNameAndDescription

@Transactional
public ExpressionExperimentSetValueObject updateNameAndDescription(ExpressionExperimentSetValueObject eeSetVO,
                                                                   boolean loadEEIds)

Description copied from interface: ExpressionExperimentSetValueObjectHelper

Updates the database record for the param experiment set value object (permission permitting) with the value object's name and description.

Specified by:

updateNameAndDescription in interface ExpressionExperimentSetValueObjectHelper

loadEEIds - whether the returned value object should have the ExpressionExperimentSetValueObject.getExpressionExperimentIds() collection populated. This might be useful information, but loading the IDs takes slightly longer, so for larger amount of EE sets this might want to be avoided.

updateMembers

@Transactional
public void updateMembers(Long groupId,
                          Collection<Long> eeIds)

Description copied from interface: ExpressionExperimentSetValueObjectHelper

Updates the database record for the param experiment set value object (permission permitting) with the members specified of the set, not the name or description etc.

Specified by:

updateMembers in interface ExpressionExperimentSetValueObjectHelper

delete

@Transactional
public void delete(ExpressionExperimentSetValueObject eesvo)

Description copied from interface: ExpressionExperimentSetValueObjectHelper

Delete the experiment set corresponding to the given VO.

Specified by:

delete in interface ExpressionExperimentSetValueObjectHelper

convertToEntity

public ExpressionExperimentSet convertToEntity(ExpressionExperimentSetValueObject setVO)

Tries to load an existing experiment set with the param's id, if no experiment can be loaded, create a new one with id = null. Sets all fields of the new entity with values from the valueObject param.

Specified by:

convertToEntity in interface ExpressionExperimentSetValueObjectHelper

Parameters:

setVO - if null, returns null

Returns:

ee set