Package ubic.gemma.persistence.service.association.coexpression

Class CoexpressionCacheImpl

java.lang.Object

ubic.gemma.persistence.service.association.coexpression.CoexpressionCacheImpl

All Implemented Interfaces:

InitializingBean, CoexpressionCache

@Component
public class CoexpressionCacheImpl
extends Object
implements InitializingBean, CoexpressionCache

Configures the cache for gene2gene coexpression.

Author:

paul

Field Summary

Fields inherited from interface ubic.gemma.persistence.service.association.coexpression.CoexpressionCache

CACHE_QUERY_STRINGENCY

Constructor Summary

Constructors

Constructor	Description
CoexpressionCacheImpl()

Method Summary

Modifier and Type	Method	Description
void	afterPropertiesSet()	Initialize the cache; if it already exists it will not be recreated.
void	cacheCoexpression(Long geneId, Collection<CoexpressionValueObject> r)
void	cacheCoexpression(Map<Long,List<CoexpressionValueObject>> r)
void	clearCache()	Remove all elements from the cache.
List<CoexpressionValueObject>	get(Long geneId)
boolean	isEnabled()
boolean	remove(Long id)
int	remove(Collection<Long> genes)	Bulk remove from cache.
void	shutdown()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CoexpressionCacheImpl

public CoexpressionCacheImpl()

Method Detail

afterPropertiesSet

public void afterPropertiesSet()

Initialize the cache; if it already exists it will not be recreated.

Specified by:

afterPropertiesSet in interface InitializingBean

cacheCoexpression

public void cacheCoexpression(Long geneId,
                              Collection<CoexpressionValueObject> r)

Specified by:

cacheCoexpression in interface CoexpressionCache

cacheCoexpression

public void cacheCoexpression(Map<Long,List<CoexpressionValueObject>> r)

Specified by:

cacheCoexpression in interface CoexpressionCache

clearCache

public void clearCache()

Description copied from interface: CoexpressionCache

Remove all elements from the cache.

Specified by:

clearCache in interface CoexpressionCache

get

public List<CoexpressionValueObject> get(Long geneId)

Specified by:

get in interface CoexpressionCache

Parameters:

geneId - gene id

Returns:

results sorted in descending order of support, or null if the gene was not in the cache

isEnabled

public boolean isEnabled()

Specified by:

isEnabled in interface CoexpressionCache

remove

public int remove(Collection<Long> genes)

Description copied from interface: CoexpressionCache

Bulk remove from cache.

Specified by:

remove in interface CoexpressionCache

Parameters:

genes - genes

Returns:

number of cache entries affected

remove

public boolean remove(Long id)

Specified by:

remove in interface CoexpressionCache

shutdown

public void shutdown()

Specified by:

shutdown in interface CoexpressionCache