Package ubic.gemma.model.genome.gene

Class Multifunctionality

java.lang.Object

ubic.gemma.model.genome.gene.Multifunctionality

All Implemented Interfaces:

Serializable

public class Multifunctionality
extends Object
implements Serializable

See Also:

Serialized Form

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	Multifunctionality.Factory

Constructor Summary

Constructors

Constructor	Description
Multifunctionality()	No-arg constructor added to satisfy javabean contract

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object object)
Long	getId()
Integer	getNumGoTerms()
Double	getRank()
Double	getScore()
int	hashCode()
void	setId(Long id)
void	setNumGoTerms(Integer numGoTerms)
void	setRank(Double rank)
void	setScore(Double score)
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

Multifunctionality

public Multifunctionality()

No-arg constructor added to satisfy javabean contract

Method Detail

getId

public Long getId()

setId

public void setId(Long id)

getNumGoTerms

public Integer getNumGoTerms()

Returns:

The number of GO terms the gene has, after propagation, but excluding the roots

setNumGoTerms

public void setNumGoTerms(Integer numGoTerms)

getRank

public Double getRank()

Returns:

The relative rank of the gene among other genes in the taxon, based on the multifunctionality score (not the number of GO terms, though that would generally give a similar result). A rank of 1 means the "most multifunctional", while 0 is assigned to the least multifunctional gene.

setRank

public void setRank(Double rank)

getScore

public Double getScore()

Returns:

The multifunctionality of the gene, as scored using the "optimal ranking" method of Gillis and Pavlidis (2011). It is a value from 0 to 1, where 1 is the highest multifunctionality. Note that this score is not very useful by itself as it really only makes sense as a relative measure among genes. Thus the rank should be used for display.

setScore

public void setScore(Double score)

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object object)

Overrides:

equals in class Object

toString

public String toString()

Overrides:

toString in class Object