Package ubic.gemma.model.genome

Class Chromosome

java.lang.Object

ubic.gemma.model.genome.Chromosome

All Implemented Interfaces:

Serializable, Identifiable

public class Chromosome
extends Object
implements Identifiable, Serializable

Immutable representation of a chromosome

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
Chromosome()	No-arg constructor added to satisfy javabean contract
Chromosome(String name, ExternalDatabase assemblyDatabase, BioSequence sequence, Taxon taxon)
Chromosome(String name, Taxon taxon)

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object object)
ExternalDatabase	getAssemblyDatabase()
Long	getId()
String	getName()
BioSequence	getSequence()
Taxon	getTaxon()
int	hashCode()
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

Chromosome

public Chromosome()

No-arg constructor added to satisfy javabean contract

Chromosome

public Chromosome(String name,
                  Taxon taxon)

Chromosome

public Chromosome(String name,
                  ExternalDatabase assemblyDatabase,
                  BioSequence sequence,
                  Taxon taxon)

Method Detail

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object object)

Overrides:

equals in class Object

toString

public String toString()

Overrides:

toString in class Object

getAssemblyDatabase

public ExternalDatabase getAssemblyDatabase()

Returns:

The database where we have the assesmbly of the chromosome, such as the GoldenPath.

getName

public String getName()

getId

public Long getId()

Specified by:

getId in interface Identifiable

getSequence

public BioSequence getSequence()

Returns:

The sequence of the chromosome. This is typically going to be just a reference to the sequence in an external database.

getTaxon

public Taxon getTaxon()