Package ubic.gemma.core.ontology.providers

Class PatoOntologyService

java.lang.Object

ubic.basecode.ontology.jena.AbstractOntologyService

ubic.basecode.ontology.providers.AbstractOntologyService

ubic.gemma.core.ontology.providers.PatoOntologyService

All Implemented Interfaces:

OntologyService

public class PatoOntologyService
extends AbstractOntologyService

Phenotype And Trait Ontology

Nested Class Summary

Nested classes/interfaces inherited from interface ubic.basecode.ontology.providers.OntologyService

OntologyService.InferenceMode, OntologyService.LanguageLevel

Field Summary

Fields inherited from class ubic.basecode.ontology.jena.AbstractOntologyService

log

Constructor Summary

Constructors

Constructor	Description
PatoOntologyService()

Method Summary

Modifier and Type	Method	Description
protected String	getCacheName()
protected String	getOntologyName()
protected String	getOntologyUrl()
protected boolean	isOntologyEnabled()

Methods inherited from class ubic.basecode.ontology.jena.AbstractOntologyService

cancelInitializationThread, findIndividuals, findResources, findTerm, findUsingAlternativeId, getAdditionalPropertyUris, getAllURIs, getChildren, getDescription, getExcludedWordsFromStemming, getInferenceMode, getLanguageLevel, getName, getParents, getProcessImports, getResource, getTerm, getTermIndividuals, index, initialize, initialize, isEnabled, isInitializationThreadAlive, isInitializationThreadCancelled, isOntologyLoaded, isSearchEnabled, loadModel, loadModelFromStream, loadTermsInNameSpace, setAdditionalPropertyUris, setExcludedWordsFromStemming, setInferenceMode, setLanguageLevel, setProcessImports, setSearchEnabled, startInitializationThread, toString, waitForInitializationThread

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface ubic.basecode.ontology.providers.OntologyService

findIndividuals, findResources, findTerm, getChildren, getParents

Constructor Detail

PatoOntologyService

public PatoOntologyService()

Method Detail

getOntologyName

protected String getOntologyName()

Specified by:

getOntologyName in class AbstractOntologyService

getOntologyUrl

protected String getOntologyUrl()

Specified by:

getOntologyUrl in class AbstractOntologyService

isOntologyEnabled

protected boolean isOntologyEnabled()

Specified by:

isOntologyEnabled in class AbstractOntologyService

getCacheName

@Nullable
protected String getCacheName()

Specified by:

getCacheName in class AbstractOntologyService