ExperimentAnnotationEndpoint (Gemma Web 1.31.10-SNAPSHOT API)

java.lang.Object
- org.springframework.xml.transform.TransformerObjectSupport
- - org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint
  - - ubic.gemma.web.services.AbstractGemmaEndpoint
    - - ubic.gemma.web.services.ExperimentAnnotationEndpoint

All Implemented Interfaces:

org.springframework.ws.server.endpoint.PayloadEndpoint
```
public class ExperimentAnnotationEndpoint
extends AbstractGemmaEndpoint
```
Expression Experiments in Gemma contain annotations. These annotations can be retrieved using this service. The category often just an ontology URI and the term is the URI of the annotation. The category is left blank for terms that are not from ontologies (free text). The evidence code represents how the annotation came to be. (http://www.geneontology.org/GO.evidence.shtml)

Author:

klc, gavin

Field Summary

Fields
Modifier and Type Field Description

static String LOCAL_NAME
The local name of the expected request/response.
- Fields inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint
  DELIMITER, manualAuthenticationService, NAMESPACE_URI, REQUEST, RESPONSE
- Fields inherited from class org.springframework.xml.transform.TransformerObjectSupport
  logger

Constructor Summary

Constructors
Constructor Description

ExperimentAnnotationEndpoint()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected Element`	`invokeInternal(Element requestElement, Document document)`	Reads the given `requestElement`, and sends a the response back.
`void`	`setExpressionExperimentService(ExpressionExperimentService ExpressionExperimentService)`	Sets the "business service" to delegate to.

Methods inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint
authenticate, buildBadResponse, buildWrapper, encode, getArrayValues, getLastSingleNodeValue, getNodeValue, getOptionalNodeValue, getSingleNodeValue, readReport, readReport, readReport, setLocalName, setManualAuthenticationService, writeReport

Methods inherited from class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint
createDocumentBuilder, createDocumentBuilderFactory, getDocumentElement, invoke, setAlwaysTransform, setExpandEntityReferences, setNamespaceAware, setValidating

Methods inherited from class org.springframework.xml.transform.TransformerObjectSupport
createTransformer, getTransformerFactory, newTransformerFactory, setTransformerFactoryClass, transform

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - LOCAL_NAME
```
public static final String LOCAL_NAME
```
    The local name of the expected request/response.
    
    See Also:
    
    Constant Field Values
- Constructor Detail
  - ExperimentAnnotationEndpoint
```
public ExperimentAnnotationEndpoint()
```
- Method Detail
  - setExpressionExperimentService
```
public void setExpressionExperimentService(ExpressionExperimentService ExpressionExperimentService)
```
    Sets the "business service" to delegate to.
  - invokeInternal
```
protected Element invokeInternal(Element requestElement,
                                 Document document)
```
    Reads the given requestElement, and sends a the response back.
    
    Specified by:
    
    invokeInternal in class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint
    
    Parameters:
    
    requestElement - the contents of the SOAP message as DOM elements
    
    document - a DOM document to be used for constructing Nodes
    
    Returns:
    
    the response element