Package ubic.gemma.web.services

Class DifferentialExpressionProbeResultEndpoint

java.lang.Object

org.springframework.xml.transform.TransformerObjectSupport

org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

ubic.gemma.web.services.AbstractGemmaEndpoint

ubic.gemma.web.services.DifferentialExpressionProbeResultEndpoint

All Implemented Interfaces:

org.springframework.ws.server.endpoint.PayloadEndpoint

public class DifferentialExpressionProbeResultEndpoint
extends AbstractGemmaEndpoint

Allows access to the differential expression analysis. Given 1) an expression experiment set id 2) a collection of gene ids, 3) a taxon id, and a 4) threshold (enter 1 to include all results) The Expression Experiment Set ID (1) can be found by using the ExpressionExperimentSetIDEndpoint, which will return all the expression experiment set ids for all taxons and their corresponding description. The stringency is the minimum number of times we found a particular relationship. Returns a list consisting of 4 fields: 1) the gene id, 2) the EE ID, 3) probe name, and 4) the q value

Author:

gavin

Field Summary

Fields inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint

DELIMITER, manualAuthenticationService, NAMESPACE_URI, REQUEST, RESPONSE

Fields inherited from class org.springframework.xml.transform.TransformerObjectSupport

logger

Constructor Summary

Constructors

Constructor	Description
DifferentialExpressionProbeResultEndpoint()

Method Summary

Modifier and Type	Method	Description
protected Element	invokeInternal(Element requestElement, Document document)	Reads the given requestElement, and sends a the response back.
void	setDifferentialExpressionResultService(DifferentialExpressionResultService differentialExpressionAnalysisResultService)
void	setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)
void	setExpressionExperimentSetService(ExpressionExperimentSetService expressionExperimentSetService)
void	setGeneService(GeneService geneService)
void	setTaxonService(TaxonService taxonService)

Methods inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint

authenticate, buildBadResponse, buildWrapper, encode, getArrayValues, getLastSingleNodeValue, getNodeValue, getOptionalNodeValue, getSingleNodeValue, readReport, readReport, readReport, setLocalName, setManualAuthenticationService, writeReport

Methods inherited from class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

createDocumentBuilder, createDocumentBuilderFactory, getDocumentElement, invoke, setAlwaysTransform, setExpandEntityReferences, setNamespaceAware, setValidating

Methods inherited from class org.springframework.xml.transform.TransformerObjectSupport

createTransformer, getTransformerFactory, newTransformerFactory, setTransformerFactoryClass, transform

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DifferentialExpressionProbeResultEndpoint

public DifferentialExpressionProbeResultEndpoint()

Method Detail

setDifferentialExpressionResultService

public void setDifferentialExpressionResultService(DifferentialExpressionResultService differentialExpressionAnalysisResultService)

setExpressionExperimentService

public void setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)

setExpressionExperimentSetService

public void setExpressionExperimentSetService(ExpressionExperimentSetService expressionExperimentSetService)

setGeneService

public void setGeneService(GeneService geneService)

setTaxonService

public void setTaxonService(TaxonService taxonService)

invokeInternal

protected Element invokeInternal(Element requestElement,
                                 Document document)

Reads the given requestElement, and sends a the response back.

Specified by:

invokeInternal in class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

Parameters:

requestElement - the contents of the SOAP message as DOM elements

document - a DOM document to be used for constructing Nodes

Returns:

the response element