Package ubic.gemma.persistence.service.expression.experiment

Class ExpressionExperimentDaoTest

java.lang.Object

org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

org.springframework.test.context.junit4.AbstractTransactionalJUnit4SpringContextTests

ubic.gemma.core.util.test.BaseDatabaseTest

ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentDaoTest

All Implemented Interfaces:

Aware, ApplicationContextAware

@ContextConfiguration
@TestExecutionListeners(WithSecurityContextTestExecutionListener.class)
public class ExpressionExperimentDaoTest
extends BaseDatabaseTest

Nested Class Summary

Nested classes/interfaces inherited from class ubic.gemma.core.util.test.BaseDatabaseTest

BaseDatabaseTest.BaseDatabaseTestContextConfiguration, BaseDatabaseTest.DataSourceInitializer

Field Summary

Fields inherited from class ubic.gemma.core.util.test.BaseDatabaseTest

sessionFactory

Fields inherited from class org.springframework.test.context.junit4.AbstractTransactionalJUnit4SpringContextTests

jdbcTemplate, simpleJdbcTemplate

Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

applicationContext, logger

Constructor Summary

Constructors

Constructor	Description
ExpressionExperimentDaoTest()

Method Summary

Modifier and Type	Method	Description
void	testFilterAndCountByArrayDesign()
void	testGetAnnotationUsageFrequency()
void	testGetAnnotationUsageFrequencyExcludingFreeTextCategories()
void	testGetAnnotationUsageFrequencyExcludingFreeTextTerms()
void	testGetAnnotationUsageFrequencyExcludingUncategorizedTerms()
void	testGetAnnotationUsageFrequencyRetainMentionedTerm()
void	testGetAnnotationUsageFrequencyWithUncategorizedCategory()
void	testGetArrayDesignUsageFrequency()
void	testGetCategoriesWithUsageFrequency()
void	testGetFilterableProperties()
void	testGetOriginalPlatformUsageFrequency()
void	testGetPerTaxonCount()
void	testGetTechnologyTypeUsageFrequency()
void	testLoadMultipleReferences()
void	testLoadReference()
void	testRemoveExperimentWithSharedBioMaterial()
void	testSubquery()
void	testSubqueryWithMultipleJointures()
void	testThaw()
void	testThawBioAssays()
void	testThawForFrontEnd()
void	testThawTransientEntity()
void	testThawWithoutVectors()

Methods inherited from class org.springframework.test.context.junit4.AbstractTransactionalJUnit4SpringContextTests

countRowsInTable, countRowsInTableWhere, deleteFromTables, dropTables, executeSqlScript, setDataSource, setSqlScriptEncoding

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

setApplicationContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExpressionExperimentDaoTest

public ExpressionExperimentDaoTest()

Method Detail

testGetFilterableProperties

public void testGetFilterableProperties()

testThawTransientEntity

public void testThawTransientEntity()

testThaw

public void testThaw()

testThawBioAssays

public void testThawBioAssays()

testThawForFrontEnd

public void testThawForFrontEnd()

testThawWithoutVectors

public void testThawWithoutVectors()

testLoadReference

public void testLoadReference()

testLoadMultipleReferences

public void testLoadMultipleReferences()

testGetTechnologyTypeUsageFrequency

@WithMockUser
public void testGetTechnologyTypeUsageFrequency()

testGetArrayDesignUsageFrequency

@WithMockUser
public void testGetArrayDesignUsageFrequency()

testGetOriginalPlatformUsageFrequency

@WithMockUser
public void testGetOriginalPlatformUsageFrequency()

testGetCategoriesWithUsageFrequency

@WithMockUser(authorities="GROUP_ADMIN")
public void testGetCategoriesWithUsageFrequency()

testGetAnnotationUsageFrequency

@WithMockUser(authorities="GROUP_ADMIN")
public void testGetAnnotationUsageFrequency()

testGetAnnotationUsageFrequencyRetainMentionedTerm

@WithMockUser(authorities="GROUP_ADMIN")
public void testGetAnnotationUsageFrequencyRetainMentionedTerm()

testGetAnnotationUsageFrequencyExcludingFreeTextTerms

@WithMockUser(authorities="GROUP_ADMIN")
public void testGetAnnotationUsageFrequencyExcludingFreeTextTerms()

testGetAnnotationUsageFrequencyExcludingFreeTextCategories

@WithMockUser(authorities="GROUP_ADMIN")
public void testGetAnnotationUsageFrequencyExcludingFreeTextCategories()

testGetAnnotationUsageFrequencyExcludingUncategorizedTerms

@WithMockUser(authorities="GROUP_ADMIN")
public void testGetAnnotationUsageFrequencyExcludingUncategorizedTerms()

testGetAnnotationUsageFrequencyWithUncategorizedCategory

@WithMockUser(authorities="GROUP_ADMIN")
public void testGetAnnotationUsageFrequencyWithUncategorizedCategory()

testGetPerTaxonCount

@WithMockUser("bob")
public void testGetPerTaxonCount()

testFilterAndCountByArrayDesign

@WithMockUser
public void testFilterAndCountByArrayDesign()

testSubquery

public void testSubquery()

testSubqueryWithMultipleJointures

public void testSubqueryWithMultipleJointures()

testRemoveExperimentWithSharedBioMaterial

public void testRemoveExperimentWithSharedBioMaterial()