Package ubic.gemma.core.analysis.expression.diff

Class TTestAnalyzerTest

java.lang.Object

org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

ubic.gemma.core.util.test.BaseSpringContextTest

ubic.gemma.core.analysis.expression.diff.BaseAnalyzerConfigurationTest

ubic.gemma.core.analysis.expression.diff.TTestAnalyzerTest

All Implemented Interfaces:

Aware, InitializingBean, ApplicationContextAware

public class TTestAnalyzerTest
extends BaseAnalyzerConfigurationTest

See test/data/stat-tests/README.txt for R code.

Author:

keshav

Field Summary

Fields inherited from class ubic.gemma.core.analysis.expression.diff.BaseAnalyzerConfigurationTest

expressionDataMatrixService, processedExpressionDataVectorService

Fields inherited from class ubic.gemma.core.util.test.BaseSpringContextTest

externalDatabaseService, jdbcTemplate, log, persisterHelper, rule, taxonService, testHelper

Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

applicationContext, logger

Constructor Summary

Constructors

Constructor	Description
TTestAnalyzerTest()

Method Summary

Modifier and Type	Method	Description
void	testOneSampleTtest()
void	testTTestWithExpressionExperiment()	Tests the t-test with an ExpressionExperiment.

Methods inherited from class ubic.gemma.core.analysis.expression.diff.BaseAnalyzerConfigurationTest

setUp, tearDown

Methods inherited from class ubic.gemma.core.util.test.BaseSpringContextTest

addTestAnalyses, afterPropertiesSet, countRowsInTable, deleteFromTables, executeSqlScript, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setPersisterHelper, setTaxonService, setTestCollectionSize, setUpAuthentication, setUpSecurityContextHolderStrategy, tearDownSecurityContext

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

setApplicationContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

TTestAnalyzerTest

public TTestAnalyzerTest()

Method Detail

testOneSampleTtest

public void testOneSampleTtest()
                        throws Exception

Throws:

Exception

testTTestWithExpressionExperiment

public void testTTestWithExpressionExperiment()

Tests the t-test with an ExpressionExperiment.