A B C E F G J L M N O P R S T U
All Classes All Packages

A

afterPropertiesSet() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

afterPropertiesSet() - Method in class ubic.gemma.web.util.BaseSpringWebTest

afterPropertiesSet() - Method in class ubic.gemma.web.util.BaseWebTest

AnchorTagUtilTest - Class in ubic.gemma.web.util

AnchorTagUtilTest() - Constructor for class ubic.gemma.web.util.AnchorTagUtilTest

applicationContext - Variable in class ubic.gemma.web.util.BaseSpringWebTest

ArrayDesignControllerTest - Class in ubic.gemma.web.controller.expression.arrayDesign

ArrayDesignControllerTest() - Constructor for class ubic.gemma.web.controller.expression.arrayDesign.ArrayDesignControllerTest

AuditControllerTest - Class in ubic.gemma.web.remote

AuditControllerTest() - Constructor for class ubic.gemma.web.remote.AuditControllerTest

B

BaseSpringWebTest - Class in ubic.gemma.web.util

Class to extend for tests of controllers et al.

BaseSpringWebTest() - Constructor for class ubic.gemma.web.util.BaseSpringWebTest

BaseWebTest - Class in ubic.gemma.web.util

Base class for a Web-based unit test.

BaseWebTest() - Constructor for class ubic.gemma.web.util.BaseWebTest

BaseWebTest.BaseWebTestContextConfiguration - Class in ubic.gemma.web.util

BaseWebTestContextConfiguration() - Constructor for class ubic.gemma.web.util.BaseWebTest.BaseWebTestContextConfiguration

BibRefControllerTest - Class in ubic.gemma.web.controller.common.description.bibref

Tests the BibliographicReferenceController

BibRefControllerTest() - Constructor for class ubic.gemma.web.controller.common.description.bibref.BibRefControllerTest

C

ConfigurationCookieTest - Class in ubic.gemma.web.util

ConfigurationCookieTest() - Constructor for class ubic.gemma.web.util.ConfigurationCookieTest

CuratableValueObjectTest - Class in ubic.gemma.web.controller.expression

CuratableValueObjectTest() - Constructor for class ubic.gemma.web.controller.expression.CuratableValueObjectTest

E

EntityDelegatorTest - Class in ubic.gemma.web.remote

EntityDelegatorTest() - Constructor for class ubic.gemma.web.remote.EntityDelegatorTest

ErrorPagesTest - Class in ubic.gemma.web.controller

ErrorPagesTest() - Constructor for class ubic.gemma.web.controller.ErrorPagesTest

exceptionResolver() - Method in class ubic.gemma.web.util.BaseWebTest.BaseWebTestContextConfiguration

ExperimentalDesignControllerIntegrationTest - Class in ubic.gemma.web.controller.expression.experiment

ExperimentalDesignControllerIntegrationTest() - Constructor for class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

ExperimentalDesignControllerTest - Class in ubic.gemma.web.controller.expression.experiment

ExperimentalDesignControllerTest() - Constructor for class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

ExpressionExperimentControllerTest - Class in ubic.gemma.web.controller.expression.experiment

ExpressionExperimentControllerTest() - Constructor for class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentControllerTest

F

FileUploadUtilTest - Class in ubic.gemma.web.util.upload

FileUploadUtilTest() - Constructor for class ubic.gemma.web.util.upload.FileUploadUtilTest

G

GemmaEndpointTest - Class in ubic.gemma.web.services

GemmaEndpointTest() - Constructor for class ubic.gemma.web.services.GemmaEndpointTest

J

JOB_LENGTH - Static variable in interface ubic.gemma.web.util.MockLongJobController

L

LoggingIntegrationTest - Class in ubic.gemma.web.logging

LoggingIntegrationTest() - Constructor for class ubic.gemma.web.logging.LoggingIntegrationTest

M

mailEngine() - Method in class ubic.gemma.web.util.BaseWebTest.BaseWebTestContextConfiguration

MessageSourceTest - Class in ubic.gemma.web.util

MessageSourceTest() - Constructor for class ubic.gemma.web.util.MessageSourceTest

messageUtil() - Method in class ubic.gemma.web.util.BaseWebTest.BaseWebTestContextConfiguration

MockLongJobController - Interface in ubic.gemma.web.util

Note: do not use parameterized collections as parameters for ajax methods in this class! Type information is lost during proxy creation so DWR can't figure out what type of collection the method should take.

MockLongJobControllerImpl - Class in ubic.gemma.web.util

Controller that does nothing except wait a while.

MockLongJobControllerImpl() - Constructor for class ubic.gemma.web.util.MockLongJobControllerImpl

mvc - Variable in class ubic.gemma.web.util.BaseSpringWebTest

mvc - Variable in class ubic.gemma.web.util.BaseWebTest

N

newGet(String) - Method in class ubic.gemma.web.util.BaseSpringWebTest

newPost(String) - Method in class ubic.gemma.web.util.BaseSpringWebTest

Convenience methods to make tests simpler

O

OntologyControllerTest - Class in ubic.gemma.web.controller

OntologyControllerTest() - Constructor for class ubic.gemma.web.controller.OntologyControllerTest

P

PubMedQueryControllerTest - Class in ubic.gemma.web.controller.common.description.bibref

PubMedQueryControllerTest() - Constructor for class ubic.gemma.web.controller.common.description.bibref.PubMedQueryControllerTest

R

RssFeedControllerTest - Class in ubic.gemma.web.controller.common.rss

RssFeedControllerTest() - Constructor for class ubic.gemma.web.controller.common.rss.RssFeedControllerTest

runJob(TaskCommand) - Method in interface ubic.gemma.web.util.MockLongJobController

runJob(TaskCommand) - Method in class ubic.gemma.web.util.MockLongJobControllerImpl

runSecuredMethodOnSchedule() - Method in class ubic.gemma.web.scheduler.SchedulerSecurityTest

runSecuredMethodOnScheduleMultiGroup() - Method in class ubic.gemma.web.scheduler.SchedulerSecurityTest

runUnauthorizedMethodOnSchedule() - Method in class ubic.gemma.web.scheduler.SchedulerSecurityTest

S

SchedulerSecurityTest - Class in ubic.gemma.web.scheduler

Tests security of methods run by Quartz.

SchedulerSecurityTest() - Constructor for class ubic.gemma.web.scheduler.SchedulerSecurityTest

SecurityControllerTest - Class in ubic.gemma.web.controller.security

SecurityControllerTest() - Constructor for class ubic.gemma.web.controller.security.SecurityControllerTest

setUp() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

setUp() - Method in class ubic.gemma.web.controller.common.description.bibref.BibRefControllerTest

setUp() - Method in class ubic.gemma.web.controller.common.rss.RssFeedControllerTest

setUp() - Method in class ubic.gemma.web.controller.expression.CuratableValueObjectTest

setUp() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

setUp() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

setUp() - Method in class ubic.gemma.web.controller.OntologyControllerTest

setUp() - Method in class ubic.gemma.web.controller.security.SecurityControllerTest

setUp() - Static method in class ubic.gemma.web.logging.LoggingIntegrationTest

setUp() - Method in class ubic.gemma.web.logging.SlackAppenderTest

setUpMocks() - Method in class ubic.gemma.web.util.AnchorTagUtilTest

SignupControllerTest - Class in ubic.gemma.web.controller.common.auditAndSecurity

This test replaces the recaptcha service used by SignupController, so it is annotated with DirtiesContext to invalidate the context once all the tests have completed.

SignupControllerTest() - Constructor for class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

SlackAppenderTest - Class in ubic.gemma.web.logging

SlackAppenderTest() - Constructor for class ubic.gemma.web.logging.SlackAppenderTest

T

TaskRunningTest - Class in ubic.gemma.web.controller

Test of long job control.

TaskRunningTest() - Constructor for class ubic.gemma.web.controller.TaskRunningTest

tearDown() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

tearDown() - Method in class ubic.gemma.web.controller.expression.CuratableValueObjectTest

tearDown() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

tearDown() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

tearDown() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentControllerTest

tearDown() - Method in class ubic.gemma.web.controller.OntologyControllerTest

tearDown() - Method in class ubic.gemma.web.logging.SlackAppenderTest

tearDown() - Method in class ubic.gemma.web.util.upload.FileUploadUtilTest

test() - Method in class ubic.gemma.web.controller.ErrorPagesTest

test() - Method in class ubic.gemma.web.logging.SlackAppenderTest

test() - Method in class ubic.gemma.web.remote.EntityDelegatorTest

test() - Method in class ubic.gemma.web.util.MessageSourceTest

testAddCharacteristicToFactorValue() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testAddStatementToFactorValue() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testAddUpdateEvent() - Method in class ubic.gemma.web.remote.AuditControllerTest

testCancelledRun() - Method in class ubic.gemma.web.controller.TaskRunningTest

testClearNeedsAttention() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

testConfigurationCookieA() - Method in class ubic.gemma.web.util.ConfigurationCookieTest

testConfigurationCookieB() - Method in class ubic.gemma.web.util.ConfigurationCookieTest

testConfigurationCookieC() - Method in class ubic.gemma.web.util.ConfigurationCookieTest

testConfigurationCookieD() - Method in class ubic.gemma.web.util.ConfigurationCookieTest

testConfigurationCookieE() - Method in class ubic.gemma.web.util.ConfigurationCookieTest

testCopyUploadedFileStreamClosed() - Method in class ubic.gemma.web.util.upload.FileUploadUtilTest

testCopyUploadFileWhenFileContainsDirectory() - Method in class ubic.gemma.web.util.upload.FileUploadUtilTest

testCreateExperimentalFactor() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testCreateFactorValueCharacteristic() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

testCreateFactorValueWithBlankCategory() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

testCreateFactorValueWithBlankValue() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

testCuratableValueObjectCreation() - Method in class ubic.gemma.web.controller.expression.CuratableValueObjectTest

testCuratableValueObjectInteraction() - Method in class ubic.gemma.web.controller.expression.CuratableValueObjectTest

testDelete() - Method in class ubic.gemma.web.controller.common.description.bibref.BibRefControllerTest

testDeleteOfNonExistingEntry() - Method in class ubic.gemma.web.controller.common.description.bibref.BibRefControllerTest

testDisplayForm() - Method in class ubic.gemma.web.controller.common.description.bibref.PubMedQueryControllerTest

testEntityDelegatorWithNullId() - Method in class ubic.gemma.web.remote.EntityDelegatorTest

testFailedRun() - Method in class ubic.gemma.web.controller.TaskRunningTest

testGemmaOntologyUnavailable() - Method in class ubic.gemma.web.controller.OntologyControllerTest

testGetBioMaterialLink() - Method in class ubic.gemma.web.util.AnchorTagUtilTest

testGetExperimentalFactors() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testGetExperimentalFactorValues() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testGetExpressionExperimentLink() - Method in class ubic.gemma.web.util.AnchorTagUtilTest

testGetInfo() - Method in class ubic.gemma.web.controller.security.SecurityControllerTest

Experiment has to be public.

testGetLatestExperiments() - Method in class ubic.gemma.web.controller.common.rss.RssFeedControllerTest

testGetMissingTerm() - Method in class ubic.gemma.web.controller.OntologyControllerTest

testGetObo() - Method in class ubic.gemma.web.controller.OntologyControllerTest

testGetTerm() - Method in class ubic.gemma.web.controller.OntologyControllerTest

testGetTgfvoAsHtml() - Method in class ubic.gemma.web.controller.OntologyControllerTest

testGetTgfvoAsRdf() - Method in class ubic.gemma.web.controller.OntologyControllerTest

testLoadStatusSummariesLimit() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentControllerTest

testMarkAsNeedsAttention() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

testMarkAsNeedsAttentionWhenFactorValueIsAlreadyMarked() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

testMessageDefinedInGemmaCore() - Method in class ubic.gemma.web.util.MessageSourceTest

testNeedsAttentionIsResetWhenFVIsSaved() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerTest

testOnSubmit() - Method in class ubic.gemma.web.controller.common.description.bibref.PubMedQueryControllerTest

testOnSubmitAlreadyExists() - Method in class ubic.gemma.web.controller.common.description.bibref.PubMedQueryControllerTest

testOnSubmitInvalidValue() - Method in class ubic.gemma.web.controller.common.description.bibref.PubMedQueryControllerTest

testOnSubmitNotFound() - Method in class ubic.gemma.web.controller.common.description.bibref.PubMedQueryControllerTest

testReadReport() - Method in class ubic.gemma.web.services.GemmaEndpointTest

testRemoveUsersFromGroupDisallowed() - Method in class ubic.gemma.web.controller.security.SecurityControllerTest

testRootLogger() - Method in class ubic.gemma.web.logging.LoggingIntegrationTest

testShow() - Method in class ubic.gemma.web.controller.common.description.bibref.BibRefControllerTest

testShowAllArrayDesigns() - Method in class ubic.gemma.web.controller.expression.arrayDesign.ArrayDesignControllerTest

testShowAllForExperiments() - Method in class ubic.gemma.web.controller.common.description.bibref.BibRefControllerTest

testShowExperimentalDesign() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testShowExperimentalDesignByExperimentId() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testShowExperimentalDesignByExperimentShortName() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testSignup() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

testSignupWhenRecaptchaIsDisabled() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

testSignupWithPasswordDosentMatch() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

testSignupWithRecaptchaIsInvalid() - Method in class ubic.gemma.web.controller.common.auditAndSecurity.SignupControllerTest

testSuccessfulRun() - Method in class ubic.gemma.web.controller.TaskRunningTest

testThatJerseyServerRuntimeLoggerDoesNotUseTheSlackAppender() - Method in class ubic.gemma.web.logging.LoggingIntegrationTest

testUpdateFactorValueStatement() - Method in class ubic.gemma.web.controller.expression.experiment.ExperimentalDesignControllerIntegrationTest

testUpdatePermissions() - Method in class ubic.gemma.web.controller.security.SecurityControllerTest

testUpdatePubMed() - Method in class ubic.gemma.web.controller.expression.experiment.ExpressionExperimentControllerTest

testWarnLogsShouldNotBeAppended() - Method in class ubic.gemma.web.logging.SlackAppenderTest

testWhenClassUsesSimpleName() - Method in class ubic.gemma.web.remote.EntityDelegatorTest

U

ubic.gemma.web.controller - package ubic.gemma.web.controller

ubic.gemma.web.controller.common.auditAndSecurity - package ubic.gemma.web.controller.common.auditAndSecurity

ubic.gemma.web.controller.common.description.bibref - package ubic.gemma.web.controller.common.description.bibref

ubic.gemma.web.controller.common.rss - package ubic.gemma.web.controller.common.rss

ubic.gemma.web.controller.expression - package ubic.gemma.web.controller.expression

ubic.gemma.web.controller.expression.arrayDesign - package ubic.gemma.web.controller.expression.arrayDesign

ubic.gemma.web.controller.expression.experiment - package ubic.gemma.web.controller.expression.experiment

ubic.gemma.web.controller.security - package ubic.gemma.web.controller.security

ubic.gemma.web.logging - package ubic.gemma.web.logging

ubic.gemma.web.remote - package ubic.gemma.web.remote

ubic.gemma.web.scheduler - package ubic.gemma.web.scheduler

ubic.gemma.web.services - package ubic.gemma.web.services

ubic.gemma.web.util - package ubic.gemma.web.util

ubic.gemma.web.util.upload - package ubic.gemma.web.util.upload

A B C E F G J L M N O P R S T U
All Classes All Packages