Package ubic.gemma.model.genome.gene

Class GeneServiceTest

java.lang.Object

org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

ubic.gemma.core.util.test.BaseSpringContextTest

ubic.gemma.model.genome.gene.GeneServiceTest

All Implemented Interfaces:

Aware, InitializingBean, ApplicationContextAware

public class GeneServiceTest
extends BaseSpringContextTest

Author:

jsantos

Field Summary

Fields inherited from class ubic.gemma.core.util.test.BaseSpringContextTest

externalDatabaseService, jdbcTemplate, log, persisterHelper, rule, taxonService, testHelper

Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

applicationContext, logger

Constructor Summary

Constructors

Constructor	Description
GeneServiceTest()

Method Summary

Modifier and Type	Method	Description
void	tearDown()
void	testFindByAccessionNcbi()
void	testFindByAccessionNcbiWithSource()
void	testFindByAccessionOther()
void	testFindByNcbiId()
void	testFindEvenThoughHaveSameSymbol()
void	testGetByGeneAlias()
void	testGetMicroRnaByTaxon()
void	testLoadGenes()

Methods inherited from class ubic.gemma.core.util.test.BaseSpringContextTest

addTestAnalyses, afterPropertiesSet, countRowsInTable, deleteFromTables, executeSqlScript, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setPersisterHelper, setTaxonService, setTestCollectionSize, setUpAuthentication, setUpSecurityContextHolderStrategy, tearDownSecurityContext

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

setApplicationContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GeneServiceTest

public GeneServiceTest()

Method Detail

tearDown

public void tearDown()

testFindByAccessionNcbi

public void testFindByAccessionNcbi()

testFindByAccessionNcbiWithSource

public void testFindByAccessionNcbiWithSource()

testFindByAccessionOther

public void testFindByAccessionOther()

testFindByNcbiId

public void testFindByNcbiId()

testFindEvenThoughHaveSameSymbol

public void testFindEvenThoughHaveSameSymbol()

testGetByGeneAlias

public void testGetByGeneAlias()

testGetMicroRnaByTaxon

public void testGetMicroRnaByTaxon()

testLoadGenes

public void testLoadGenes()