Package ubic.gemma.core.apps

Class MakeExperimentsPublicCli

java.lang.Object

ubic.gemma.core.util.AbstractCLI

ubic.gemma.core.util.AbstractAuthenticatedCLI

ubic.gemma.core.apps.ExpressionExperimentManipulatingCLI

ubic.gemma.core.apps.MakeExperimentsPublicCli

All Implemented Interfaces:

CLI

public class MakeExperimentsPublicCli
extends ExpressionExperimentManipulatingCLI

Make data sets public. You must be the owner of the experiment to do this.

Author:

paul

Field Summary

Fields inherited from class ubic.gemma.core.apps.ExpressionExperimentManipulatingCLI

auditEventService, auditTrailService, eeService, expressionExperiments, force

Fields inherited from class ubic.gemma.core.util.AbstractCLI

ABORTED, FAILURE, FAILURE_FROM_ERROR_OBJECTS, FOOTER, HEADER, log, SUCCESS

Constructor Summary

Constructors

Constructor	Description
MakeExperimentsPublicCli()

Method Summary

Modifier and Type	Method	Description
protected void	doWork()	Command line implementation.
String	getCommandName()	A short memorable name for the command that can be used to locate this class.
String	getShortDesc()	Obtain a short description for this command explaining what it does.

Methods inherited from class ubic.gemma.core.apps.ExpressionExperimentManipulatingCLI

buildOptions, findGeneByOfficialSymbol, getCommandGroup, getTaxonByName, noNeedToRun, processOptions

Methods inherited from class ubic.gemma.core.util.AbstractAuthenticatedCLI

executeBatchTasks, processStandardOptions, requireLogin

Methods inherited from class ubic.gemma.core.util.AbstractCLI

addAutoOption, addAutoOption, addDateOption, addErrorObject, addErrorObject, addErrorObject, addSuccessObject, addSuccessObject, addThreadsOption, buildStandardOptions, executeCommand, getAutoSeekEventType, getBean, getBean, getLimitingDate, getNumThreads, isAutoSeek, promptConfirmationOrAbort, setAllowPositionalArguments

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MakeExperimentsPublicCli

public MakeExperimentsPublicCli()

Method Detail

getCommandName

public String getCommandName()

Description copied from interface: CLI

A short memorable name for the command that can be used to locate this class.

Returns:

name; if null or blank, this will not be available as a shortcut command.

doWork

protected void doWork()
               throws Exception

Description copied from class: AbstractCLI

Command line implementation.

This is called after AbstractCLI.buildOptions(Options) and AbstractCLI.processOptions(CommandLine), so the implementation can assume that all its arguments have already been initialized.

Specified by:

doWork in class AbstractCLI

Throws:

Exception - in case of unrecoverable failure, an exception is thrown and will result in a AbstractCLI.FAILURE exit code, otherwise use AbstractCLI.addErrorObject(java.lang.Object, java.lang.String, java.lang.Throwable) to indicate an error and resume processing

getShortDesc

public String getShortDesc()

Description copied from interface: CLI

Obtain a short description for this command explaining what it does.

Specified by:

getShortDesc in interface CLI

Overrides:

getShortDesc in class AbstractAuthenticatedCLI