Package ubic.gemma.persistence.persister

Class GenomePersister

java.lang.Object

ubic.gemma.persistence.persister.AbstractPersister

ubic.gemma.persistence.persister.CommonPersister

ubic.gemma.persistence.persister.GenomePersister

All Implemented Interfaces:

Persister

Direct Known Subclasses:

ArrayDesignPersister

public abstract class GenomePersister
extends CommonPersister

Author:

pavlidis

Nested Class Summary

Nested classes/interfaces inherited from class ubic.gemma.persistence.persister.AbstractPersister

AbstractPersister.Caches

Field Summary

Fields inherited from class ubic.gemma.persistence.persister.AbstractPersister

log, REPORT_BATCH_SIZE

Constructor Summary

Constructors

Constructor	Description
GenomePersister()

Method Summary

Modifier and Type	Method	Description
protected Object	doPersist(Object entity, AbstractPersister.Caches caches)
protected Object	doPersistOrUpdate(Object entity, AbstractPersister.Caches caches)
protected BioSequence	persistBioSequence(BioSequence bioSequence, AbstractPersister.Caches caches)
protected Gene	persistGene(Gene gene, AbstractPersister.Caches caches)
protected Taxon	persistTaxon(Taxon taxon, AbstractPersister.Caches caches)

Methods inherited from class ubic.gemma.persistence.persister.CommonPersister

fillInDatabaseEntry, persistAuditTrail, persistContact, persistExternalDatabase, persistProtocol, persistQuantitationType, persistUnit

Methods inherited from class ubic.gemma.persistence.persister.AbstractPersister

doPersist, getSessionFactory, persist, persist, persistOrUpdate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GenomePersister

public GenomePersister()

Method Detail

doPersist

protected Object doPersist(Object entity,
                           AbstractPersister.Caches caches)

Overrides:

doPersist in class CommonPersister

doPersistOrUpdate

protected Object doPersistOrUpdate(Object entity,
                                   AbstractPersister.Caches caches)

Overrides:

doPersistOrUpdate in class AbstractPersister

persistBioSequence

protected BioSequence persistBioSequence(BioSequence bioSequence,
                                         AbstractPersister.Caches caches)

persistGene

protected Gene persistGene(Gene gene,
                           AbstractPersister.Caches caches)

persistTaxon

protected Taxon persistTaxon(Taxon taxon,
                             AbstractPersister.Caches caches)