Package ubic.gemma.web.persistence

Interface SessionListManager

    • Method Detail

      • addExperimentSet

        ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject addExperimentSet​(ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject eesvo)

      • addExperimentSet

        ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject addExperimentSet​(ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject eesvo,
                                                                                                       boolean modified)

      • addGeneSet

        ubic.gemma.core.genome.gene.SessionBoundGeneSetValueObject addGeneSet​(ubic.gemma.core.genome.gene.SessionBoundGeneSetValueObject gsvo)

      • addGeneSet

        ubic.gemma.core.genome.gene.SessionBoundGeneSetValueObject addGeneSet​(ubic.gemma.core.genome.gene.SessionBoundGeneSetValueObject gsvo,
                                                                      boolean modified)

      • getAllExperimentSets

        Collection<ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject> getAllExperimentSets()

      • getAllGeneSets

        Collection<ubic.gemma.core.genome.gene.SessionBoundGeneSetValueObject> getAllGeneSets()

      • getAllGeneSets

        Collection<ubic.gemma.core.genome.gene.SessionBoundGeneSetValueObject> getAllGeneSets​(Long taxonId)

      • getExperimentSetById

        ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject getExperimentSetById​(Long id)
        Get the session-bound group using the group's id

      • getExperimentsInSet

        Collection<ubic.gemma.model.expression.experiment.ExpressionExperimentDetailsValueObject> getExperimentsInSet​(Long id)

      • getGeneSetById

        ubic.gemma.core.genome.gene.SessionBoundGeneSetValueObject getGeneSetById​(Long id)
        Get the session-bound group using the group's id

      • getGenesInGroup

        Collection<ubic.gemma.model.genome.gene.GeneValueObject> getGenesInGroup​(Long groupId)
        AJAX If the current user has access to given gene group will return the gene ids in the gene group

      • getModifiedExperimentSets

        Collection<ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject> getModifiedExperimentSets()

      • getModifiedExperimentSets

        Collection<ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject> getModifiedExperimentSets​(Long taxonId)

      • getModifiedGeneSets

        Collection<ubic.gemma.core.genome.gene.SessionBoundGeneSetValueObject> getModifiedGeneSets()

      • getModifiedGeneSets

        Collection<ubic.gemma.core.genome.gene.SessionBoundGeneSetValueObject> getModifiedGeneSets​(Long taxonId)

      • incrementAndGetLargestExperimentSetSessionId

        Long incrementAndGetLargestExperimentSetSessionId()

      • incrementAndGetLargestGeneSetSessionId

        Long incrementAndGetLargestGeneSetSessionId()

      • removeExperimentSet

        void removeExperimentSet​(ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject eesvo)

      • removeGeneSet

        void removeGeneSet​(ubic.gemma.core.genome.gene.SessionBoundGeneSetValueObject gsvo)

      • updateExperimentSet

        void updateExperimentSet​(ubic.gemma.model.expression.experiment.SessionBoundExpressionExperimentSetValueObject eesvo)

      • updateGeneSet

        void updateGeneSet​(ubic.gemma.core.genome.gene.SessionBoundGeneSetValueObject gsvo)