Package ubic.gemma.core.analysis.preprocess.batcheffects

Class BatchEffectDetails

java.lang.Object

ubic.gemma.core.analysis.preprocess.batcheffects.BatchEffectDetails

public class BatchEffectDetails
extends Object

provide some basic information about the properties and strength of a batch effect, if any.

Author:

Paul

Constructor Summary

Constructors

Constructor	Description
BatchEffectDetails(BatchInformationFetchingEvent infoEvent, boolean dataWasBatchCorrected, boolean singleBatch)

Method Summary

Modifier and Type	Method	Description
Integer	getComponent()
double	getComponentVarianceProportion()
boolean	getDataWasBatchCorrected()
Boolean	getHadSingletonBatches()
Boolean	getHadUninformativeHeaders()
double	getPvalue()
boolean	hasBatchInformation()
boolean	isFailedToGetBatchInformation()
boolean	isSingleBatch()
void	setComponent(Integer component)
void	setComponentVarianceProportion(double componentVarianceProportion)
void	setPvalue(double pvalue)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

BatchEffectDetails

public BatchEffectDetails(@Nullable
                          BatchInformationFetchingEvent infoEvent,
                          boolean dataWasBatchCorrected,
                          boolean singleBatch)

Method Detail

getComponent

public Integer getComponent()

getComponentVarianceProportion

public double getComponentVarianceProportion()

getDataWasBatchCorrected

public boolean getDataWasBatchCorrected()

getHadSingletonBatches

public Boolean getHadSingletonBatches()

getHadUninformativeHeaders

public Boolean getHadUninformativeHeaders()

getPvalue

public double getPvalue()

hasBatchInformation

public boolean hasBatchInformation()

isFailedToGetBatchInformation

public boolean isFailedToGetBatchInformation()

isSingleBatch

public boolean isSingleBatch()

Returns:

true if the experiment was determined to have just one batch, or false for any other state (including we don't know)

setComponent

public void setComponent(Integer component)

setComponentVarianceProportion

public void setComponentVarianceProportion(double componentVarianceProportion)

setPvalue

public void setPvalue(double pvalue)

toString

public String toString()

Overrides:

toString in class Object