A B C E M N P R S T U
All Classes All Packages

A

arrayDesignMergeCli() - Method in class ubic.gemma.core.apps.ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration

ArrayDesignMergeCliTest - Class in ubic.gemma.core.apps

ArrayDesignMergeCliTest() - Constructor for class ubic.gemma.core.apps.ArrayDesignMergeCliTest

ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration - Class in ubic.gemma.core.apps

ArrayDesignMergeCliTestContextConfiguration() - Constructor for class ubic.gemma.core.apps.ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration

arrayDesignMergeService() - Method in class ubic.gemma.core.apps.ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration

arrayDesignReportService() - Method in class ubic.gemma.core.apps.ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration

arrayDesignService() - Method in class ubic.gemma.core.apps.ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration

auditEventService() - Method in class ubic.gemma.core.util.test.BaseCliTest.BaseCliTestContextConfiguration

auditTrailService() - Method in class ubic.gemma.core.util.test.BaseCliTest.BaseCliTestContextConfiguration

B

BaseCliTest - Class in ubic.gemma.core.util.test

Minimal setup

BaseCliTest() - Constructor for class ubic.gemma.core.util.test.BaseCliTest

BaseCliTest.BaseCliTestContextConfiguration - Class in ubic.gemma.core.util.test

Basic context configuration

BaseCliTestContextConfiguration() - Constructor for class ubic.gemma.core.util.test.BaseCliTest.BaseCliTestContextConfiguration

C

CliTest - Class in ubic.gemma.core.apps

CliTest() - Constructor for class ubic.gemma.core.apps.CliTest

E

expressionExperimentService() - Method in class ubic.gemma.core.util.test.BaseCliTest.BaseCliTestContextConfiguration

ExternalDatabaseUpdaterCliTest - Class in ubic.gemma.core.apps

ExternalDatabaseUpdaterCliTest() - Constructor for class ubic.gemma.core.apps.ExternalDatabaseUpdaterCliTest

M

manualAuthenticationService() - Method in class ubic.gemma.core.util.test.BaseCliTest.BaseCliTestContextConfiguration

MeterRegistryCliConfigurerTest - Class in ubic.gemma.core.metrics

MeterRegistryCliConfigurerTest() - Constructor for class ubic.gemma.core.metrics.MeterRegistryCliConfigurerTest

N

NCBIGene2GOAssociationLoaderCLITest - Class in ubic.gemma.core.apps

NCBIGene2GOAssociationLoaderCLITest() - Constructor for class ubic.gemma.core.apps.NCBIGene2GOAssociationLoaderCLITest

P

persisterHelper() - Method in class ubic.gemma.core.util.test.BaseCliTest.BaseCliTestContextConfiguration

PubMedSearcherIntegrationTest - Class in ubic.gemma.core.loader.entrez.pubmed

Tests command line.

PubMedSearcherIntegrationTest() - Constructor for class ubic.gemma.core.loader.entrez.pubmed.PubMedSearcherIntegrationTest

R

RNASeqDataAddCliTest - Class in ubic.gemma.core.apps

RNASeqDataAddCliTest() - Constructor for class ubic.gemma.core.apps.RNASeqDataAddCliTest

S

setUp() - Method in class ubic.gemma.core.apps.ExternalDatabaseUpdaterCliTest

setUp() - Method in class ubic.gemma.core.apps.RNASeqDataAddCliTest

T

tearDown() - Method in class ubic.gemma.core.apps.ArrayDesignMergeCliTest

tearDown() - Method in class ubic.gemma.core.apps.ExternalDatabaseUpdaterCliTest

tearDown() - Method in class ubic.gemma.core.apps.RNASeqDataAddCliTest

test() - Method in class ubic.gemma.core.apps.ArrayDesignMergeCliTest

test() - Method in class ubic.gemma.core.apps.ExternalDatabaseUpdaterCliTest

test() - Method in class ubic.gemma.core.apps.NCBIGene2GOAssociationLoaderCLITest

test() - Method in class ubic.gemma.core.metrics.MeterRegistryCliConfigurerTest

testMain() - Method in class ubic.gemma.core.loader.entrez.pubmed.PubMedSearcherIntegrationTest

Test method for AbstractCLI.executeCommand(String[]).

testMaskPwd() - Method in class ubic.gemma.core.apps.CliTest

testPaired() - Method in class ubic.gemma.core.apps.RNASeqDataAddCliTest

testUnpaired() - Method in class ubic.gemma.core.apps.RNASeqDataAddCliTest

testWhenPairednessIsUnknown() - Method in class ubic.gemma.core.apps.RNASeqDataAddCliTest

U

ubic.gemma.core.apps - package ubic.gemma.core.apps

ubic.gemma.core.loader.entrez.pubmed - package ubic.gemma.core.loader.entrez.pubmed

ubic.gemma.core.metrics - package ubic.gemma.core.metrics

ubic.gemma.core.util.test - package ubic.gemma.core.util.test

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