Package ubic.gemma.web.services

Class Gene2GoTermEndpoint

java.lang.Object

org.springframework.xml.transform.TransformerObjectSupport

org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

ubic.gemma.web.services.AbstractGemmaEndpoint

ubic.gemma.web.services.Gene2GoTermEndpoint

All Implemented Interfaces:

org.springframework.ws.server.endpoint.PayloadEndpoint

public class Gene2GoTermEndpoint
extends AbstractGemmaEndpoint

Given a collection of Gene IDs, will return a collection of Gene Ontology URIs for each gene.

Author:

klc, gavin

Field Summary

Fields

Modifier and Type	Field	Description
static String	GENE2GO_LOCAL_NAME	The local name of the expected request/response.

Fields inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint

DELIMITER, manualAuthenticationService, NAMESPACE_URI, REQUEST, RESPONSE

Fields inherited from class org.springframework.xml.transform.TransformerObjectSupport

logger

Constructor Summary

Constructors

Constructor	Description
Gene2GoTermEndpoint()

Method Summary

Modifier and Type	Method	Description
protected Element	invokeInternal(Element requestElement, Document document)	Reads the given requestElement, and sends a the response back.
void	setGeneOntologyService(GeneOntologyService goS)	Sets the "business service" to delegate to.
void	setGeneService(GeneService geneS)

Methods inherited from class ubic.gemma.web.services.AbstractGemmaEndpoint

authenticate, buildBadResponse, buildWrapper, encode, getArrayValues, getLastSingleNodeValue, getNodeValue, getOptionalNodeValue, getSingleNodeValue, readReport, readReport, readReport, setLocalName, setManualAuthenticationService, writeReport

Methods inherited from class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

createDocumentBuilder, createDocumentBuilderFactory, getDocumentElement, invoke, setAlwaysTransform, setExpandEntityReferences, setNamespaceAware, setValidating

Methods inherited from class org.springframework.xml.transform.TransformerObjectSupport

createTransformer, getTransformerFactory, newTransformerFactory, setTransformerFactoryClass, transform

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

GENE2GO_LOCAL_NAME

public static final String GENE2GO_LOCAL_NAME

The local name of the expected request/response.

See Also:

Constant Field Values

Constructor Detail

Gene2GoTermEndpoint

public Gene2GoTermEndpoint()

Method Detail

setGeneOntologyService

public void setGeneOntologyService(GeneOntologyService goS)

Sets the "business service" to delegate to.

setGeneService

public void setGeneService(GeneService geneS)

invokeInternal

protected Element invokeInternal(Element requestElement,
                                 Document document)

Reads the given requestElement, and sends a the response back.

Specified by:

invokeInternal in class org.springframework.ws.server.endpoint.AbstractDomPayloadEndpoint

Parameters:

requestElement - the contents of the SOAP message as DOM elements

document - a DOM document to be used for constructing Nodes

Returns:

the response element